LOC110505829 (LOC106611279)


Basic Information

Item Value
gene id LOC110505829
gene name LOC106611279
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34970065 ~ 35000444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962731.1
GCGAGGGGGATACGATCGTGAACGAGCGCGCAGTCAGGCTGGCTGATACCGTTAGTCACGTCTGGGATCTgcagcgatagagagagagagatgctgaggtgacagggagagagaagtagaAAAGGGACGATTAAATCAAACTCATTATGTCACTGCTGAATTCACATGTCTGTATGTAAACCTCAGCTGCAGAATCAACGTTGCATGCATAACGCGCCGCTCTGCGGAATTCCACTCAATGTCTCAACATTCCGTCAAGACAAACATAGAGGATTATTTGTAACCACGCCCGGCTCCTTTCGGATCAAGGATCGGAGCGGTCAAGGTCTCTACGGGAACCTGATGCCCGACCCAATCTAATACGGCTGGTGGTAGTTAGCAGGAGTGGTAGCAAAGGAAGACCCACAGTGAGCAGCAGTCCACCGCAGGCGGGATGAGTGCTGCAGCGATGGACCAAGCTGACATCCTCACTGTGCTTGTCCTGGTCAAGGAACGATGGAAagtgACAAAGAAGATCGGCGGCGGTGGCTTTGGGGAGATCTACGAGGCGTTGGACCTGCTGACCAGGGTCAGTGTTGCTCTGAAGGTGGAGTCGGCACAGCAGCCTAAACAGGTCCTCAAGATGGAGGTGGCTGTCCTCAAGAAACTCCAGGGTAAAGAACACGTGTGTCGCTTTGTTGGATGCGGCCGCAATGACCGTTTCAACTATGTGGTGATGGAGCTTCAGGGGCGTAACCTGGCAGAGCTGAGGCGGAGTATGACGCGGGGCACGTTTACAGTCAGCACCACCCTGAGACTGGGACGACAGACACTAGAAGCTATAGAGAGCATCCACTCTGTTGGCTTCCTGCACAGAGACATCAAACCAtccaACTTTGCCATGGGCCGGTTCCCCAGTACCTGTAGGACCTGCTACATGCTGGACTTTGGCCTGGCACGCCAGTTCACTAACTCCTGCCAAGAGGTCCGACCGcctcgGCCAGTAGCAGGGTTCAGAGGCACAGTCCGCTATGCTTCCGTCAACGCACACAAGAACAAGGAGATGGGTCGGCATGACGACCTGTGGTCCCTCTTCTACATGCTGGTGGAGTTCATGGTTGGACAGTTGCCATGGAGAAAGATCAAAGACAAGGAGCATGTAGGGAAGCTGAAGGACACCTATGACCACAGGCTCATGCTGAAACACCTGCCTGCTGAGTTCACTGTCTTCCTGGATCACATCTCTAACCTGGACTACTTCACCAAACCAGACTATCAGCTGCTGTTGTCAGTGTTTGACAACAGTATGAAGACCTACAACGTGGTGGAGAATGACCCGTATGACTGGGAGAGGACTGGGTCTGATGGTACTCTGACCATCAACGCTACAGCCACCACACCACAGCACCACACGCGACTCACCCCAGCACACATGGGCATGGCCAATGCATCCCTGATCCCTGGGGACCTGGCGAGGGAGAACACAGACGATGTTCTGCAGGACGAGCAGCTTAGTGACAACGGGGAGAACAACCCTCCTCCAGACCGACGCCCCGGATCCCCCAGCATGCCCCGGGCCAACCAGGAAGCTGACGTCTGGGAGGAGCTGGACCGTAACCGTAACCGCATCAGGACCGCTGTGTGGAAGGCAGCAACAGAGGAAGAGAACAGCAACAACCAGGGGGGTCTCCAGAGCCCGTATGCCAACCTCAGCCTGGGCTCCCCTGTCCGGGTACACTCTGAGATAGTGGGGGTGTCAGGACAGGATGGTGGTAGTCCTCTCCTCAGGAAGCTCCGTAACATCCACAGCTTTGAGCTGGACAGGAGGCTGACCCTGGAGACCAAGCCCAGTCCTGAACGGTTCATGGAGGCGTGCTCAGGGAATCAGCTGGAGGGCTGtgggcagcagcaggagaagggcCTGGCTGTACCCACTGGAGGTGCCACAGGACCAGGGCGTGGTGGCACTGACCGAGTCTGGCACAACGACGAGGAGTTCCTATCCGGTGGCGGTGCCAGCGGTTCACCCAAACCCGTCTCCCCTCACTCCCACAGGTCTCTGGAACAGGGCGAGGGGGCCCCCAGCAGCGGAGGCTTCGTGGCCCTCAACCTGAGCTCCGGCCATGGGAAGGTTGACTCCAGGGAGTGGGTGATGATGGAGAGGCCCAGCGGGTCCCCAGGGACAGGAATGGGAGATAAAGCTACGACCAGCCCCTccaaggaggaagaagaggagctgCAGGTGCTGGAGGTACCCCTGGGGTCAGGAGAGGGGTCCACGGGGAACCCCAGTCCTGGTCAGATCCACGGGGACAGGAATGGGGACCTCCAGGGGCATCCAGGCGCCAACGGACGACCCCCCAGGGTGGACAGACTGGAACTGAGTGTGGGACCTACGGGAAGCCTGCCCCCCGTCACCCCCTCTAGCCCTGCtgatgccctggctgagggagcACTCACACAGCTCCctacctctcctccatctctgcctGAGGAGGTGTTGGCCAGGATGTCCAGTCCCCTGCTCCTGCGTTCCCCAAGCCCGCACACCCAGACCCTCCTCACCACCCTGTCGGACCCCCTGCACCAGAGGGACCCCCCTGGGATGAGTCGCAGCTACTCAGCCGACCACCACAACCAGTACCTCCTCCatcccacctcctcttcctcctaccaCGCCTCCCTACCGCCACCTCCTCACCCCGGCCTCGGTTCCGCCCGTAACCAATCACCCTCCGGGCGCAGGAAACTGCCCGCTATTCCGGCGGGCGCCGCCAGCAGCAAGTTCCCTTCCGTTATACGCATCACACGAGCCCAACTCCAGCAGcTGACAGCTCAGCAGTCCCCGTCTGGCTCAGACTGTGCTCCACAGGGCCTACAGCTGGAGAGACGAGAAGATGCAGCAGCTGAGGCCCAGCAGCCCCAGGATAATACTGCTACCACTGACATCTACATCCTGCCCACCCCTAGCCACACCCCTAGCCAGCCCGGCAGCCCCACCAGCCTGGATGACCTCCTGGCAGATACCCTGATCAACGGACGAGACACCCAGACCTACACCAAAGCCCACAGCCCTGTGCCAAGCCGAGCGTCCTCTCCTCGCTCCCCCCATTCTCCTCGCTCCCCCTGTTCTCCTCGCTCCCCCCATTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCATTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTCCTCATTCTCCACGTTCTAATTCTCCTCGCTCCTCCCATTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCATTCTCCTCGCTCCCCCCGTTCTCTTCGCTCCCCCCATTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTCCTCAATCTCCACGTTCTAATTCTCCTCGCTCCCCCCATTCTCCTCGCTCCCCCCGTTCTCCTCGCTCCCCCCGTTCTTCTCATTCTCCACGTTCTAATTCCCCTAAGTCCCCCCACAGCCCACTGTTCGGCCTAGTAAACGgccatctctctcccccagctaaCGGCCAGGGAGACGTCAGTGGCTGTGGAGCCTTTCCAGAGCTCAAAGACCCTGAGAGTGACCAACCCCAGCCTGACAGGGGTGATGGGGTGGAGACCACTGACCAAACCCCAGCTCTGACCACCCCCTCTCCGCCACCCAGTCCCCGTAAGGACCCCTCCCGCAAGCTGAGCCGTATCCCCGTCCTGCTGGACCTTCTCCCCACCCCTGGCTCTGCCATGGAGAAGCTGCTCCAGAAGAAAGCCCCCCACCACCAGGGAGGAGGCCAccacccagccccctctccctctatctcccacCGCGGCCCCGTCGTGGCCTTGCTCCCCCACGGGGACCAGCTGTCCTCCGCCTCAGACCACTCTGAGAAGGCCGATGAGTCGTTCCTGGGCTCTGACTGCCAGGGGAATGacgccccctccctctcctcctcttccagccCCCTGTTCCGTAAGAGCAAGATCCCACGCCCTTTTAACCCTACCAACCCGGCCCCAGAGCCGGAGAGTGCTGCACAGTACCTTCCACGCCCACCGCCGGGGAGACCACCCAGTCGGCTTGCAGCGGAGGGCAGACTGAAGCGTTATCGTACCCGAGCGGGCAGCACAAGGGACTCAGAcctcctgacctgtctgtcccAGCTGATGCACCATGGTCAGGGTGGTGGATCTGCCCGCGGTTCCCCCCACCACGGGCACTCCTCAGCCCAGCTTGTAGGCTCCCGGATGGGCATGTGTAGCCTGACCAGCTccccccaccaccatcaccaccggaGCTCCAGTGCCTCCCCACGCAGCTGTTCCTCTCTACAgcgctctgtctcctcctccccctctcgccACGAACACCGCGGGGGAGAGCGAGGCAGAGGGGTTTGTTTCGGTCGCTCCTGTTCTCCTCCCAGCTTCTCTGGGTCCCCGCCTCCTCCCCGGCGCTCCTACCCCCACCATCAGGAGATTTGCTGCTGCCGCCAGGCCCGCACCggctcccaccaccaccacgccCTCAAGTGGAAAGTCTGCAGccgcgaggagagagagaggaagtgctCCAGCAAGCTGAGCAGCAGATAGTGGGTCACTGCTCTGGCCCTGGTCCTAGCCTGACCCATAGAAACCCCTGGGCCCGTTTATTCAAGTCtctcagagtaggactgctgatctacgatcagtttggccttttagGTAATAATTAATACGATTACATGTACAATCGTATTCATTATGACCTAAAAGGTTAGACCGATCCTAGATCAGTAGTCTTATTGTGAGAGGCTTTACGAGTATGGCCTGGGAGTCAGTGTCGTTGCCACAGCAGAGGGTGGGATCGGGATGTTGATGCAGACCAAACGATCCTGCTCTGGATCAATGAAGACCTGAGGCTTCTGTCAGAGAATACTGAACATAatgtccccccctctcctcccctgtccccccctctcctccttcacacTTTCTTCTCTAATTCCAACTATTTGGTCATTGTTTAGTCCCTAATTCATATGCCCACTTTAATAGTTCATACCTAATGCGAAAAGAATCTATGTGCATTATGCTATGTATAAGATGTTGGTGTTCTTGTGAGGTGTTTTCCCTCCTATCAGCAGTGAAGTGAACACACTTAGCCCTCATTCAGAATACCCTAGGTCAGTCAGTGGATGAGCACTCATTTATTCATCACTCACCAATTTAATATAGACTCAGTCTATTCTGTTTCCTCTGTACTGACCTGGGGAGTGCAAGGTATAGCAAGTCTACATTTATGGCCATGAAGCTCCAGAGAAATGTACACTATCTACAGAACCTATTTATTTACATCTTGACACACTTGTCACACCAGGTACACACTAACTGATGACATCATCGATtgatgtgtcctctctctctctctctctctctctctctctctctctctctctctctctctgacttcagATGTACAGTGAGTGTCATTTATTTCTAAGGCATTTAAAGCAATCAATTGATCAATGATAGAAGTGATCAGTCTTTTGAGAAGGAAGTGATCCTTCCTTTAAAACAATCatataaaatgtgtgtgtgctcacacaCGTACTTGTGCCTAATGTGTTGACTGATCTGGGGAATCTAAATGGCAAACTAAATGTGTGATTGAACACTAGTTACTGGACCATGATTCCCTTTGTATGCTCCTCTTCAGAATGGAGTCTGACTTTGTGTCCCAATTCTCTACCCTTCCTCCCTGGAGGAATGGTGTAAGAGATATGATGGCAACCCTCCCTAACCTTGCCCATGCTTACAACCATCCAATTCATTTAAATATATggatggggggggtgggggggggggggggtggattggGATGCCTGCTGAGGAGGATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGATAACACTTATGGTACTCATTACCCACTACACTAGTGGTGAATACTAAGTTATTATTATCATTCATGTATAATGTGTGCCTTGCCTTGGCACTTTGAGCAGCTTCTGGTTTCACTGCAAAGTATGTTTCTCATTTTTATTCAAGGAGTCTAATAAGACTAATTTGTGCCAgctgcagacagacagtcctcaTCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAGTCTTATTCACTACAAGGAAAAGGAAGCCAAGttaatgtttttatttgatttattcaaATAACGATCATTGTTATTTATGATATTAAAAAAAGGACATGTTTTAAACTAAAACGTAGATATCCTGTGTTGTATAAAGTTTAGGACAAGTCCAACATTTATGTCAAATAATATCATACTATTTATGTCAGTTtccctcctccagtacccccaacagcacacgttgttgtagccccggacaaacacacctgatttagtTAATCGagggcttgatgatgagttgacaagtttaatcaggtgtgcttgtccagggctacaataGAAATGCGTACTGTtgtgggtactggaggactggaggactggaggagggaaacACCGATTTATGTCATAAATATCCTATACCAAATCAATGTTTCAAACTTCCAAAGGATAAAAAACATGCGAAGAAGAATGTTGTCTTTGCTTTGTAATGACATGTTTTGTGCACTATTATTTCAAACAGTTAATGTATTGTTTGAGAACCGACCCCATTTTCTTTACTTCATAAAGATTCAATGAACACTCATTTAAAACCTCCCTCACCTAACATTGGTTCTACCTACTACACCCTCTCCCTTAGCCTGAAATCCAGAACCAGTTTTGTGCTGACATTCCACTCGttgtactctgtgtcattgtCAAGCATTGGCATGACAAGGAGTGGTATGATAGCAGAAACAGTGATACGCAGGCtacctctccccacccctctgcTTGTAATACACTGTGATATAACTAACTCATGCTTCCAGCACTACTACGCCTTGCATGCGCTGCCTACCGAGAAAAACAATCAACCAATCAGTGAAGTAAGCAGCATACCAGTTCCCATAATGCACTGTGATTGTCTGAAAGGGACTTATGTTTGTTGGGTAGTACCACATGTATTTTGGTTGGAATATTTCATTTGCTTAGTTTTCCCTTTCGTCTCATGATCTCGTTCACTCTTATCGTCCCACTTGACCCACAGCATTGGTCTGGTTTCCTAGCTCTCCAATGCTCACATCTTAGGACTACTGTACTGACTCAttactgataaaaaaaaaa
>TU2260403
AGGAGGATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGATAACACTTATGGTACTCATTACCCACTACACTAGTGGTGAATACTAAGTTATTATTATCATTCATGTATAATGTGTGCCTTGCCTTGGCACTTTGAGCAGCTTCTGGTTTCACTGCAAAGTATGTTTCTCATTTTTATTCAAGGAGTCTAATAAGACTAATTTGTGCCAgctgcagacagacagtcctcaTCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAGTCTTATTCACTACAAGGAAAAGGAAGCCAAGttaatgtttttatttgatttattcaaATAACGATCATTGTTATTTATGATATTAAAAAAAGGACATGTTTTAAACTAAAACGTAGATATCCTGTGTTGTATAAAGTTTAGGACAAGTCCAACATTTATGTCAAATAATATCATACTATTTATGTCAGTTtccctcctccagtacccccaacagcacacgttgttgtagccccggacaaacacacctgatttagtTAATCGagggcttgatgatgagttgacaagtttaatcaggtgtgcttgtccagggctacaataGAAATGCGTACTGTtgtgggtactggaggactggaggactggaggagggaaacACCGATTTATGTCATAAATATCCTATACCAAATCAATGTTTCAAACTTCCAAAGGATAAAAAACATGCGAAGAAGAATGTTGTCTTTGCTTTGTAATGACATGTTTTGTGCACTATTATTTCAAACAGTTAATGTATTGTTTGAGAACCGACCCCATTTTCTTTACTTCATAAAGATTCAATGAACACTCATTTAAAACCTCCCTCACCTAACATTGGTTCTACCTACTACACCCTCTCCCTTAGCCTGAAATCCAGAACCAGTTTTGTGCTGACATTCCACTCGttgtactctgtgtcattgtCAAGCATTGGCATGACAAGGAGTGGTATGATAGCAGAAACAGTGATACGCAGGCtacctctccccacccctctgcTTGTAATACACTGTGATATAACTAACTCATGCTTCCAGCACTACTACGCCTTGCATGCGCTGCCTACCGAGAAAAACAATCAACCAATCAGTGAAGTAAGCAGCATACCAGTTCCCATAATGCACTGTGATTGTCTGAAAGGGACTTATGTTTGTTGGGTAGTACCACATGTATTTTGGTTGGAATATTTCATTTGCTTAGTTTTCCCTTTCGTCTCATGATCTCGTTCACTCTTATCGTCCCACT
>TU2260404
TAGACCGATCCTAGATCAGTAGTCTTATTGTGAGAGGCTTTACGAGTATGGCCTGGGAGTCAGTGTCGTTGCCACAGCAGAGGGTGGGATCGGGATGTTGATGCAGACCAAACGATCCTGCTCTGGATCAATGAAGACCTGAGGCTTCTGTCAGAGAATACTGAACATAatgtccccccctctcctcccctgtccccccctctcctccttcacacTTTCTTCTCTAATTCCAACTATTTGGTCATTGTTTAGTCCCTAATTCATATGCCCACTTTAATAGTTCATACCTAATGCGAAAAGAATCTATGTGCATTATGCTATGTATAAGATGTTGGTGTTCTTGTGAGGTGTTTTCCCTCCTATCAGCAGTGAAGTGAACACACTTAGCCCTCATTCAGAATACCCTAGGTCAGTCAGTGGATGAGCACTCATTTATTCATCACTCACCAATTTAATATAGACTCAGTCTATTCTGTTTCCTCTGTACTGACCTGGGGAGTGCAAGGTATAGCAAGTCTACATTTATGGCCATGAAGCTCCAGAGAAATGTACACTATCTACAGAACCTATTTATTTACATCTTGACACACTTGTCACACCAGGTACACACTAACTGATGACATCATCGATtgatgtgtcctctctctct
>TU2260406
GAATGGGAGATAAAGCTACGACCAGCCCCTccaaggaggaagaagaggagctgCAGGTGCTGGAGGTACCCCTGGGGTCAGGAGAGGGGTCCACGGGGAACCCCAGTCCTGGTCAGATCCACGGGGACAGGAATGGGGACCTCCAGGGGCATCCAGGCGCCAACGGACGACCCCCCAGGGTGGACAGACTGGAACTGAGTGTGGGACCTACGGGAAGCCTGCCCCCCGTCACCCCCTCTAGCCCTGCtgatgccctggctgagggagcACTCACACAGCTCCctacctctcctccatctctgcctGAGGAGGTGTTGGCCAGGATGTCCAGTCCCCTGCTCCTGCGTTCCCCAAGCCCGCACACCCAGACCCTCCTCACCACCCTGTCGGACCCCCTGCACCAGAGGGACCCCCCTGGGATGAGTCGCAGCTACTCAGCCGACCACCACAACCAGTACCTCCTCCatcccacctcctcttcctcctaccaCGCCTCCCTACCGCCACCTCCTCACCCCGGCCTCGGTTCCGCCCGTAACCAATCACCCTCCGGGCGCAGGAAACTGCCCGCTATTCCGGCGGGCGCCGCCAGCAGCAAGTTCCCTTCCGTTATACGCATCACACGAGCCCAACTCCAGCAGcTGACAGCTCAGCAGTCCCCGTCTGGCTCAGACTGTGCTCCACAGGGCCTACAGCTGGAGAGACGAGAAGATGCAGCAGCTGAGGCCCAGCAGCCCCAGGATAATACTGCTACCACTGACATCTACATCCTGCCCACCCCTAGC

Function

NR:

description
tau-tubulin kinase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962731.1 False 7409 mRNA 0.54 15 34970065 35000444
TU2260403 False 1406 TUCP 0.40 1 34970152 34971557
TU2260404 False 649 lncRNA 0.44 1 34972022 34972670
TU2260406 True 785 TUCP 0.64 3 34974793 34979507

Neighbor

gene id symbol gene type direction distance location
LOC118944135 NA coding downstream 8782 34959801 ~ 34961283 (-)
LOC118944354 LOC106611278 coding downstream 19897 34912910 ~ 34950168 (-)
LOC110504231 LOC106611278 coding downstream 57272 34897576 ~ 34912793 (-)
LOC110505825 LOC106611276 coding downstream 76093 34774884 ~ 34893972 (-)
rin3 LOC106611275 coding downstream 230263 34715728 ~ 34739802 (-)
LOC110505831 LOC106611283 coding upstream 116040 35116484 ~ 35141705 (-)
LOC110505834 LOC106611287 coding upstream 398944 35399388 ~ 35402421 (-)
LOC118944372 NA coding upstream 501485 35501929 ~ 35503809 (-)
LOC118944362 NA coding upstream 624222 35624666 ~ 35691185 (-)
LOC110505835 LOC106611306 coding upstream 833859 35834303 ~ 35848927 (-)
G1977345 NA non-coding downstream 2196 34966226 ~ 34967869 (-)
G1977237 NA non-coding downstream 68407 34901455 ~ 34901658 (-)
G1977235 NA non-coding downstream 73437 34896077 ~ 34896628 (-)
G1977161 NA non-coding downstream 197753 34756308 ~ 34772312 (-)
G1977370 NA non-coding upstream 5796 35006240 ~ 35006454 (-)
G1977373 NA non-coding upstream 9066 35009510 ~ 35009751 (-)
G1977374 NA non-coding upstream 9465 35009909 ~ 35010127 (-)
G1977375 NA non-coding upstream 9693 35010137 ~ 35011645 (-)
G1977346 NA non-coding upstream 26656 35027100 ~ 35100978 (-)
G1977226 NA other downstream 93884 34875385 ~ 34876181 (-)
G1977046 NA other downstream 491507 34477620 ~ 34478809 (-)
G1975763 NA other downstream 1413254 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1645740 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2983181 31986443 ~ 31986884 (-)
G1977392 NA other upstream 52606 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1211502 36211946 ~ 36216230 (-)
LOC110504237 LOC106611328 other upstream 1345130 36325431 ~ 36370245 (-)
G1979607 NA other upstream 1964730 36965174 ~ 36965719 (-)
G1977355 NA non-coding upstream 12825 34985495 ~ 34985987 (-)

Expression


Co-expression Network