LOC110504237 (LOC106611328)


Basic Information

Item Value
gene id LOC110504237
gene name LOC106611328
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36325431 ~ 36370245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963030.1
TGTTTTTCACGCAACTTTACTTTTTTTGGCCTTTCAGTTTCTGCATTGTAAACGTCTGAAATGGCTATGTAGAATAACTATTTTGGAGAAAAACTTAATCACTCAAAGagtttttttatttctttcaacagGAACCATTGGGAGTTGGTTTGAAGAAAAGGAAAGTGTGACGTTTTCTTTAATGAGCAAGAAGAGGACTGTTCTGAAACATGAAGAAATCACGTGGCCATAAGTCAGACCACGGGAAAGGAGGAGgggGCGATGAGGCTGCCATCTTGGAGACAGAGGATCTGGACTTCacgggagggatgggagggggagggggtcttGACCCTGACACCATCTCCCTGGCCTCAGTCACAGCCGTCACCACTAACGTCTCCAACAAGAGATCAAAACCAGACATTAAGATGGAACCTAGTGCCGGGAGACCAGTGGATTACCAAGTTAGTGTTACCATCGTAGAGGCCAGACAGCTAGTAGGGCTGAACATGGACCCAGTGGTCTGTGTGGAGATCGGAGACGATAAGAAGTACACTCAGATGAAGGAGTCGACAAACTGCCCATATTACAATGAGTATTTTGTCTTTGACTTCCACGTCCCATCGGATGTTATGTTTGACAAGATCCTGAAGCTTTCGGTCATCCACTCCAAGAACCTGCTGCGTAGTGGCACCCTGGTTGGCTCCTTCAAACTGGACATAGGCACCGTCTACTCACAGCCAgAACACCAGTTTTTCCACAAATGGGCCCTTCTCTCTGACCCTGATGACATCACTGCCGGGTGCAAAGGTTACATTAAATGTGACATCGCCGTTGTGGGGAAAGGAGACAACATCAAGACTCCCCACAAGGCCACAGAAACCGATGAAGATGACATAGAAGGTAACCTGCTGTTACCTGAGGGGGTTCCCGCGGAGCGCCAGTGGGCTCGCTACTATGTGAAGATCTACAGAGCCGAGGGCCTTCCCAAGATGAACACCAGCATCATGGCTAATGTCAAGAAGGCTTTTATAGGGGAGAACAAGGACCTTGTGGACCCTTATGTACAAATACTGTTCGCTGGCCAGAGGGGGAAGACATCTATCCAGAAGAGCAGCTACGAGCCCATCTGGAACGAGCAGATCGTCTTCACTGAGATGTTTCCACCGCTCTGCAAACGCATGAAGGTCCAGATCCGAGACTCGGACAAAGTGAACGACGTGGCCCTCGGAACACACTTCATTGACCTGAGAAAGATCGCCAATGATGGAGACAAAGGCTTCCTTCCCACCCTGGGTCCGGCCTGGGTAAACATGTATGGCTCCACCCGTAGCTACACCATCATGGACGAGCACCAGGACCTGAACGAGGGTCTGGGGGAGGGGGTGTCCTTCAGGGCCCGTCTGCTGGTCAGCCTGTGTGTGGAGATCCTGGACACCTCCTCTCCAGAGGTTATGAGCTCCACAGAGGTCAAGGTAGAGGGGGTGCCCAAAATCTCAGAGAGCGCCACAGGGAAAGTGGAGGAGTTCTTCCTCTTCGGGGCGTTCCTGGAGGCCACCATGATTGACAGGAAGATCGGGGACAAACCAATCTGCTTCGAGGTTACAATAGGTAACTATGGGAGTGAGATTGATGGTGTGACCAAAGTCAAGTCGAGTAGCGGGAAGAAGAGTGGGGGAGACGGCGATGAAGAGGAGACAGAGCTGATCCATGGATCTAgtgatgaagaggagggagatgatGACAATGACCTGGTCTCAGTGTCCACCACCCCGCCGATGAAACCAGTCATCACCGACAGAAACTATTTCCACCTGCCTTACTTTGAGAGGAAGCCGTGTATTTACATCAAGAGCTGGTGGCAGGATCAGAGAAGAAGACTGTACAATGCCAACCTTATAGACAACATTGCCGATAAACTGGAGGAGGGTCTGAACGATGTTCAGGAGGTCATTAAGACAGAAAAGGCATATCCTGAACGCAGACTGAGAGGGGTCTTGGAGGATCTCAGCAATGGATGCAGtcAATTTCTGACTCTGGCTAACAAGGACCAAAACCAGACTGGGAGGACCAAGCTGGACAAAGAGAGACTCAAGTCCTGCATGAGGGAACTGGAGAACTTAGGTCAGCAGGCTAAGACCATCAGGACACAGGTGAAGAAGAACACAGTGAGGGATAAGATCAAGCTGGTGCAGAACTTTCTCCACAAGCTCAGGTTCCTAGCTGATGAGCCGCAGCACAGCATCCCTGACATCTACATCTGGATGATGAGTAATAACAAGCGAATCGCCTACGCCCGTGTCCCCTCCAAAGACATCCTGTACTCCGGGGTGGACGAGGAGACTGGGAAGGACTGTGGCAAAGTCAAAACCATCTTCCTTAAGCTGCCTGGTAAGAAGGGCTTTGGGGCAGCTGGCTGGACAGTGCAGGCTAAGACAGAGATCTACCTGTGGCTGGGTCTGAACCGTCAGAGGAAAGACTTCCTGTCTGGTCTGCCCAATGGCTTCGAGGAGAACAAGATGCTGAAaggacctggctcgcagtctgctcCTCCCATCAGCCTCACATACATGATGAAGCAGATCTTTCAGCTGAGGGTCCATATGTACCAGGCTCGCAGCCTGTTTGCGGCAGACAGCAGCGGCCTCTCTGACCCCTTCGCCAGGGTCTTCTTCTCCACACACAGCCAGGTCACAGAGGTGTTGAATGAGACACTGTGTCCCACCTGGGACCAGCTGATGGTGTTTGACAACGTAGAACTGTTCGGAGAGGTCGGCGAACTCAGGGACGACCCTCCTATAATCGTCATAGAAATCTATGACCAGGACACGGTGGGCAAAGCAGAGTTCATGGGCAGGACTTTCGCCAAGCCCATAACCAAGATGGCTGACGAACACTACGGACCTCCACGTTTCCCTCCCCAACTAGAGTACTACCAGATCTATAGGGGGAACTGCGCCGCTGGAGAGATGCTGGCGGCCTTCGAACTGCTGCAGATTGGTCCGCATGGTAAAGCTGACCTGCCGCCCATCGACGGTCCCACAGACATGGACCGTGGTCCCATCCTACCTGTCCCTCTGGGCATCAGACCAGTCCTCAGCAAGTACAGGATCGAGGTGCTGTTCTGGGGGCTCAGGGACCTGAAGAGGGTCAACCTAGCTGCGGTGGACAGGCCTCGTGTGGACATAGAATGTGCCGGTAAAGGGGTCCAGTCTTCCCTGATCCAGAACTACAAGAAAAATCCTAACTTCGGCACCCTGGTTAAGATGTTTGAGGTGGATCTGCCTGAGAATGAGCTGCTCCACCCTCCCCTGAACATCAGAGTGGTGGACTGCAGAGCGTTCGGTCGCTACACCTTAGTGGGGAACCATGCTGTCACCACACTACGCAAGTTCATCTACCGGGCAGCAGACAAGGAAGCCAACAACTGGAACACTCAAGAGGAGATCATTGTCAACTACGAGCCAGAACCCTCCATCAAGAAGATGGAGACCATGGTTAAGCTGGACTCTGGGTCTGATGCGGTGGTTAAAATTGAGGAGGATGATAAGggagggaagaagaagaagagaaagaagggaggagacgaggtggaggaggaagagtttGATGAGAGCATGTTGGATTGGTGGTCAAAGTACTTCGCCTCGATCGAAACTCTGATGGAGATTCTCAAGGCTCAGGAGGCAGCTATGGCAGATGCTGAGGAGAAAGAGGACCAAGATATTTCTGCTGAGGGTGGAGAGATCAAACCTGATGACTCTCCTGTCAAAGGAAAGAAAGGAAAAGGAAAGGACAAGAGGAGGCCTGGAGACATGCCAGAGAAGAAGAAGCACAAACTCAATGAGCTGCAGGTGTACCCCAAGGAGTTGGAGAAGGAGTTTGATAACTTTGAAGACTGGCTTCACACCTTCAACCTGTTCAGAGGGAAGGCCGGAGACGACGACGACCAGAACATGGCGGATGAGGACAGGATTATTGGCAAATTCAAAGGTTCTCTGTGCATGTACAAAGTGCCAGTGTCAGATGAGATGCAGAGGGAGATGGGCTTCGACTCCAACATGGGCATGTTCCAGAACATTCCAACCAACGACCCAATCAACGTTGTAGTCCGGGTCTATATCATCAGAGCAACGGATCTGCATCCAGCGGATATCAATGGAAAAGCTGATCCGTACATCGCTATCAAACTAGGAAAGTCAGACATCAAAGACAAAGAGAACTACCTCTCCAAGCAACTCAACCCCATCTTTGGCAAATCATTTGACATCGAAGCCACATTTCCCATGGACTCTACACTAACAGTATCCGTCTATGACTGGGACTTAGTGGGCACTGACGACCTGATTGGGGAGACTAAACTGGATCTGGAGAACCGTTACTACAGCAAGCACAGAGCCATATGTGGCCTCCCATCCAAATATGCCGTCCATGGCTACAATGTGTGGCGGGACCCCCTGAAGCCAACCCAGATCCTGGCCAAGCTGTGTAAAGAGGGCAAGCTGGACGGGCCCCACTATGGCCCTGGAGGACGGGTCAAGGTGGCCAACAGGATCTTCATGGGCCCAACCGAGATCGAAGATGAAAATGGTCTGAAGAAGCAGACAGATGAGCACCTGGCCCTGACGGCGCTGAAGCACTGGGAGGATATCCCTCGGGTGGGCTGTAAACTCATCCCAGAACATGTGGAGACCAGGCCACTCCTCAACCCTGATAAGCCTGGCATCGAACAGGGGAGGATTGAGATGTGGGTGGACATGTTCCCCAAGGATATGCCTGCACCTGGACCGGCCATTGATATCGCACCCAGAAAACCAAAGAAGTTTGAACTGAGGGTGATCATCTGGAACACAGACGAGGTCATTCTAGAGGATGATGACATCTTCACTGGAGAGAAGTCCAGTGATATCTTCGTGCGGGGCTGGCTGAAAGGTCAGCAGGAGGACAAGCAGGACACAGACGTCCACTACCACTCCCTGACAGGGGAGGGTCTCTTCAACTGGCGCTTCATCTACCCCTTTGACTACTTACAGGCCGAGGAGAAGATCGTCATCTCTAAGAAGGAGTCCATGTTCGCCTGGGACGAGACTGAGTATAAGATCCCTGCTCGTCTCAACCTACAAGTCTGGGATGCTGATCACTTCTCTGCAGATGACTTCTTAGGCGCCATTGAGCTGGATCTGAACCGTTTCCCTCGTGGAGCGAAGACAGCCAAGCAGTGCTCCATCAACATGGTGCTGAACGAACAGGATATTCCCATGGTGTCCATCTTCAAACAGAGGAGGATCAAGGGCTGGTGGCCCTTCCTGGCCAGAGACGAGAATGACGAGTTTGAACTCACTGGGAAAGTGGAAGCAGAGCTGCAGCTGATGACTGCAGAGGAGGCTGAGAAGAACCCAGTAGGTGAAGGACGCAATGAACCTGAACCCCTGGAGAAACCCAAccgtCCAGACACAGCCTTCCTGTGGTTCCTTATGCCTTTCAAGGCCATCAAAAACCTAATCTGCAACCAGTACTTCTGGCTCACGGTCAAGTTAGTTGTAGCCCTGCTGCTAGTGCTCATCCTGGGCCTCTTCATATACAGCATGCCTGGATACATGGTCAAGAAGCTAATGGGGGCTTGAGAAGTGAAAcatctttaaagggatagttacTCAACAACATCCAAACTCAATAATATATTCAACGTCTTGTTTTCAGTAACAAGCATCCCCTCTTCTCATGGAGTCCCTGTAACGTTGTTGCTATTTGACAAGACAAtcgtacacacacaccatgtttcGTTAAAAAAAGGTAGTAGTAAGCATTTGAATATTATGGGGTTGCAAAAAAGTTTGATCTACAAagtaaaatgttttgttttggtgTTCCTATTTTGTTCTTGCTTGAAGTCATGTATTAGTCTTGGTTTGCACTGACTGACTTTTCTGTGGCTGTTGATATTGTCTTTGTTTAACAGTGTGAAGTATGTAGTATTTTACATATAATCTGTTTTTTTGTGAATAAACTGAA
>TU2262632
CTGTGTCCCACCTGGGACCAGCTGATGGTGTTTGACAACGTAGAACTGTTCGGAGAGGTCGGCGAACTCAGGGACGACCCTCCTATAATCGTCATAGAAATCTATGACCAGGACACGGTGGGCAAAGCAGAGTTCATGGGCAGGACTTTCGCCAAGCCCATAACCAAGATGGCTGACGAACACTACGGACCTCCACGTTTCCCTCCCCAACTAGAGTACTACC
>TU2262639
ATCCAGAGCGCCACAGGGAAAGTGGAGGAGTTCTTCCTCTTCGGGGCGTTCCTGGAGGCCACCATGATTGACAGGAAGATCGGGGACAAACCAATCTGCTTCGAGGTTACAATAGGTAACTATGGGAGTGAGATTGATGGTGTGACCAAAGTCAAGTCGAGTAGCGGGAAGAAGAGTGGGGGAGACGGCGATGAAGAGGAGAC

Function

NR:

description
otoferlin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963030.1 False 5994 mRNA 0.51 42 36325431 36370245
TU2262632 False 223 TUCP 0.54 2 36345574 36347055
TU2262639 True 203 lncRNA 0.53 2 36351923 36356824

Neighbor

gene id symbol gene type direction distance location
LOC110504236 LOC106611337 coding downstream 231782 36031757 ~ 36093649 (-)
LOC118944267 NA coding downstream 294168 36030144 ~ 36031263 (-)
LOC110505835 LOC106611306 coding downstream 476504 35834303 ~ 35848927 (-)
LOC118944362 NA coding downstream 634246 35624666 ~ 35691185 (-)
LOC118944372 NA coding downstream 821622 35501929 ~ 35503809 (-)
LOC110505848 LOC106611327 coding upstream 26155 36396400 ~ 36405233 (-)
LOC110505851 LOC106611325 coding upstream 45203 36415448 ~ 36427489 (-)
tulp4b LOC106611324 coding upstream 57527 36427772 ~ 36439798 (-)
LOC110505855 LOC106611321 coding upstream 287396 36657641 ~ 36673264 (-)
LOC118944239 NA coding upstream 335255 36705500 ~ 36712775 (-)
G1979187 NA non-coding downstream 35675 36281481 ~ 36289756 (-)
G1979168 NA non-coding downstream 129591 36194148 ~ 36195840 (-)
G1979162 NA non-coding downstream 134897 36190109 ~ 36190534 (-)
G1979094 NA non-coding downstream 205183 36117255 ~ 36120248 (-)
G1979103 LOC106611334 non-coding downstream 215339 36106627 ~ 36110092 (-)
G1979285 LOC106611313 non-coding upstream 15847 36386092 ~ 36386627 (-)
G1979345 NA non-coding upstream 128638 36498883 ~ 36499161 (-)
G1979385 NA non-coding upstream 171913 36542158 ~ 36544636 (-)
G1979420 LOC106611323 non-coding upstream 215000 36585245 ~ 36591872 (-)
G1979428 LOC106603506 non-coding upstream 253654 36623899 ~ 36627233 (-)
G1979142 NA other downstream 109201 36211946 ~ 36216230 (-)
G1977346 NA other downstream 1224453 35027100 ~ 35100978 (-)
G1977392 NA other downstream 1268505 35053050 ~ 35056926 (-)
LOC110505829 LOC106611279 other downstream 1345924 34970065 ~ 35000444 (-)
G1977226 NA other downstream 1449250 34875385 ~ 34876181 (-)
G1979607 NA other upstream 594929 36965174 ~ 36965719 (-)
G1979813 NA other upstream 967501 37337746 ~ 37338882 (-)
G1980619 LOC106611366 other upstream 1833196 38203441 ~ 38204163 (-)
G1981678 NA other upstream 2666042 39036287 ~ 39038944 (-)
G1981964 NA other upstream 3186375 39556620 ~ 39569809 (-)
LOC110504237 LOC106611328 other downstream 4868 36325431 ~ 36370245 (-)

Expression


Co-expression Network