LOC110505858 (LOC106611340)


Basic Information

Item Value
gene id LOC110505858
gene name LOC106611340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36693964 ~ 36697191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585318.2
TGAATATACCCAATAAATTAGGTAGTGGGCTGGTTCCTGGCAGACGCAGCTAGATGACAACACAAAGCATAAAGGGGAAATGATTCTCCTACCTTTTGTCTGTTCTGTTTGAATGCTTTTGTTCTTATAGGGAAGTCTACGGAGGAGATATCAGGTAGTATGAGAGACAGACTAGTTGACCTGCAGGGGGTGGCCCCCACTCctccagacacagatgaaaggggTCAGGGTAGCGATGATGAGGGAGAGCTGGAGCAGCAGTCAGTGGTGTTTGAAAATGAAGATCGGATGGACAGCATCTTCACAGAAGCCCAGTCCCTGAGGAAGGAGATTGCTCTGCTCCGGATGGAAGTGAAGCGCCTGGGCAAGCAAAACAGCCGATTCCTCACCTCTGTCCGGCGGATCAGCTCCATCAAACGAGACTCCAACACCCTGGCCAGGGGCATCAAGACCCGGGGGGAGGGCATCTACAGACGGCTGGAGAAGATCAGCATGCAGCACAAACAGCTGGAAGAAGAGAACGGGGCCAATTCTACCCTGGTCCGCATGGTGCGTTCTCAGTATGTTTCTCTCACCGGGGCCTTCCACGAGGCCATGTCTGAGTACAACCAAGCAGAGATGAGCCAGAGGGAGAACTGCAAGACCCGGATCCAGCGCCAGGCAGAGATCATGGGCAAGGAGGTGACCGGCGAACAGATCGAGGAGATGGTCGAGACGGGGAAGTGGAATGTGTTCTCTGACAACCTCCTGACGGACGGGCGGACGGCACGCTCAGCGCTCACAGAGATCGAGAAGCGGCACAAGGAACTGTTGGAGCTGGAGAGTCGAATCAAGGACATCCATGAGCTGTTCTTCCAGATGGCTCTGCTGGTGGAGGAACAGGGGGCCATGGTGGACAACATAGAGGCCAACGTGGCCGCCACTACAGACTTTGTGGGCAAGGCCCAGGTTCAGATCAAGAGGTGTGTGACGTACCAGAAGAAGAGCCTCTGTAGGAGAATGTTCTGTTGTTGTTTCCCTTGCTGCAACAAGTGAGACTGACGGAGACATCAGTGTTGTTGTATTTCAAGTCACTCAGagaaaaagggttcttcaaaggggtACAGCCGAAGAAcgcttttaggttctagatggcacttttttttttttcttcctaagTGTAGGCTGCCTTTTCCTATCAAGTGTTTTCATGGCCATGAAAATGTACTTGTTTACACAAGCGCACACGCATGAACTTGATGCTGAAGATTTTcagatgtacagtatgtttgtttgatacactgattgtacaaaacattattgatgtcacttgttatccacttcaatcagtgtagatgaatgggaaTAGACAGGTtagaagccttgagacatggattgtgtatgtgtgccatttagagggtgaaagggcaagacaagatttatgtgcctttgaacggagtatggtagtaggtgccaggtgcactggtttgtgtgccaagaactgcaacgctgctgggtttttcacacgtGTATCAACAATTGTCAACCACCCAAAGGTCATGAACCCtttctagccaacttgacacaactgtgggcagcattggagtcaacatgggccagcatccctgtggaatgctttcgacaccttgtagagtccatgccccgattgACTTGAAGGCAGTTCTTCgggcaaaaggggtgcaactaaatattaggctggtgttcctaatgttttatgtTTTACTCAGtgtgaatttaaaaaatatatatatttataccgTTTTTGAATGTGACATTTTGTATGTCATGCAGCCTTTACTTCCTCTCACTGTAGAAGACACAGTTGATATTAACGCCCTTGCCTAGCTGATGTTAGGAGAAAAGACTTGATATCATACCGCAGACGCTAACATGCAAATCAATAGTGCGATGGGGTGTTCAATGTCTCTGTTGGAAAAAGCTATCTGACGCTACAGGCTTTCAGTTAAAATAAGAGTGCAGATCCAATGCTTGTTGCTCCCACTTAGATGCCCTGTAACTTTCAGCTGTATTGAACTTAGGATTTTACAAGTTATTTATGTTTTATgagaggatatatatatatatatatatatatatataatttttaaaataaataataaattctGTATAATGGCCCTCACATTTATTGTTACATTTCAGTTCCTCCAACTGACTGCAACCTCAATGACTCAACTGTATTTTACATTGAGGAAACAAGAATATGCCTCAATGTATTGTCCTGTACAGagccttcaaagtattcataccccttgactaattccacattttgttgttacagcctgaattccaaatgaattaaattgatatattttctca

Function

NR:

description
syntaxin-11-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585318.2 True 2337 mRNA 0.45 2 36693964 36697191

Neighbor

gene id symbol gene type direction distance location
rmnd1 LOC106611322 coding upstream 38086 36645560 ~ 36655878 (+)
LOC110504238 LOC106611323 coding upstream 62912 36449259 ~ 36631052 (+)
LOC110505849 LOC106611312 coding upstream 278641 36405511 ~ 36415323 (+)
trnaa-agc-9 NA coding upstream 370019 36323873 ~ 36323945 (+)
LOC110505846 LOC106603641 coding upstream 371538 36314846 ~ 36322426 (+)
trnal-uaa-61 NA coding downstream 2418 36699609 ~ 36699691 (+)
ddo ddo coding downstream 15092 36712283 ~ 36719655 (+)
LOC118944353 NA coding downstream 153682 36850873 ~ 36852603 (+)
LOC110505865 LOC106611339 coding downstream 271310 36968501 ~ 36988155 (+)
LOC110505864 LOC106611316 coding downstream 290773 36987964 ~ 36993882 (+)
G1978312 NA non-coding upstream 201006 36492051 ~ 36492958 (+)
G1978280 LOC106611324 non-coding upstream 259292 36434137 ~ 36434672 (+)
G1978249 NA non-coding upstream 334017 36359704 ~ 36359947 (+)
G1978181 NA non-coding upstream 472856 36220756 ~ 36221108 (+)
G1978081 NA non-coding upstream 665322 36028113 ~ 36028642 (+)
G1978368 NA non-coding downstream 10308 36707499 ~ 36708827 (+)
G1978398 NA non-coding downstream 42626 36739817 ~ 36741984 (+)
G1978428 NA non-coding downstream 80988 36778179 ~ 36778405 (+)
G1978440 NA non-coding downstream 98463 36795654 ~ 36799376 (+)
G1978458 NA non-coding downstream 140580 36837771 ~ 36869823 (+)
LOC110505847 LOC106611313 other upstream 298748 36376220 ~ 36824709 (+)
G1978080 NA other upstream 666227 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1962653 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1990070 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2212043 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 521070 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 567589 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1023943 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1831416 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1868687 38565810 ~ 38575881 (+)

Expression


Co-expression Network