trnal-uaa-61


Basic Information

Item Value
gene id trnal-uaa-61
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36699609 ~ 36699691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-uaa-61
accaggatggccgagtggttaaggcgttggacttaaGATCCAATGGACATATGTCCGCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uaa-61 True 83 mRNA 0.54 1 36699609 36699691

Neighbor

gene id symbol gene type direction distance location
LOC110505858 LOC106611340 coding upstream 2418 36693964 ~ 36697191 (+)
rmnd1 LOC106611322 coding upstream 43731 36645560 ~ 36655878 (+)
LOC110504238 LOC106611323 coding upstream 68557 36449259 ~ 36631052 (+)
LOC110505849 LOC106611312 coding upstream 284286 36405511 ~ 36415323 (+)
trnaa-agc-9 NA coding upstream 375664 36323873 ~ 36323945 (+)
ddo ddo coding downstream 12592 36712283 ~ 36719655 (+)
LOC118944353 NA coding downstream 151182 36850873 ~ 36852603 (+)
LOC110505865 LOC106611339 coding downstream 268810 36968501 ~ 36988155 (+)
LOC110505864 LOC106611316 coding downstream 288273 36987964 ~ 36993882 (+)
LOC110505867 LOC106611342 coding downstream 336562 37036253 ~ 37055807 (+)
G1978312 NA non-coding upstream 206651 36492051 ~ 36492958 (+)
G1978280 LOC106611324 non-coding upstream 264937 36434137 ~ 36434672 (+)
G1978249 NA non-coding upstream 339662 36359704 ~ 36359947 (+)
G1978181 NA non-coding upstream 478501 36220756 ~ 36221108 (+)
G1978081 NA non-coding upstream 670967 36028113 ~ 36028642 (+)
G1978368 NA non-coding downstream 7808 36707499 ~ 36708827 (+)
G1978398 NA non-coding downstream 40126 36739817 ~ 36741984 (+)
G1978428 NA non-coding downstream 78488 36778179 ~ 36778405 (+)
G1978440 NA non-coding downstream 95963 36795654 ~ 36799376 (+)
G1978458 NA non-coding downstream 138080 36837771 ~ 36869823 (+)
LOC110505847 LOC106611313 other upstream 304393 36376220 ~ 36824709 (+)
G1978080 NA other upstream 671872 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1968298 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1995715 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2217688 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 518570 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 565089 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1021443 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1828916 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1866187 38565810 ~ 38575881 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G288400 NA non-coding CI01000074 null 178056 ~ 178456 (-)
eurasian perch (Perca fluviatilis) trnal-uaa_20 NA coding NC_053129.1 CM020926.1 20877864 ~ 20877946 (-)
striped catfish (Pangasianodon hypophthalmus) trnal-uaa_2 NA coding NC_047610.1 CM018556.1 22311806 ~ 22311888 (+)
tiger barb (Puntius tetrazona) trnal-uaa_38 NA coding NC_056721.1 CM032090.1 2486093 ~ 2486175 (+)
tiger barb (Puntius tetrazona) trnaq-uug_13 NA non-coding NC_056704.1 CM032073.1 73647 ~ 73718 (+)
mexican tetra (Astyanax mexicanus) trnal-uaa_2 NA coding NC_035905.1 CM008308.1 24307351 ~ 24307433 (+)
mexican tetra (Astyanax mexicanus) trnal-uaa_8 NA coding NC_035911.1 CM008314.1 32513684 ~ 32513766 (+)