LOC118944239


Basic Information

Item Value
gene id LOC118944239
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36705500 ~ 36712775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039533.1
ActaggaaaaaaaaaaaatccaagtcggagctagtttttttccgagttcccagttctATTTAACACAAGGAAGTCGGAgattgagttcccagttgttttgaacgcaccaTTCGGCAAGGTTTTCTTTCTGCTGTTCGTGCACACCACAATTTTTCGGCGTTTGtgtttgtcattcaacgagaggcGAATCGTTTTCATTCCATGTTTTTTTcgattgagaaatactgcaccaaacgtcttagatgtaaaattgtaCGACTAAAGATAACTTGGACAAAAACGTcaatgaatgacagattttttttgtttgttttctttgattaattctgactattttgagagAATATTTACTAGTTACGGCgtctcaagatggacaaacagtTTGCCGCTTCTCGTTTTTCAAGGGAAGGACTTTTTAAAGGAGTAAACGCGCACATGCGGAGGATTTAACCAAAGTTTTTttaaactgacccaagacagaccagaacctgtcgtttccaatgggagcaaattaatcatagtCGACAGAATAACCAAGGATATAGGCAGAGCCAAGCACGGGCTAGTGAGGTCCTATTGGCTTGTTTTAACATTTATTCGATCATTTCGTTAGGGAACACCTAGCCCTTGCGCTCCTTCCAAACAAcacgttttttttatttcttttttttactttGGAAAAAGGGTCAAGTCTACAAAACGCAGTCCAGTCTGTTTGTTACAGGTaatagttttggaaacagaactGTATGAAGATCAAATGTTCCATCAATGACAAAAATAGCAGAATGTTGGACAAAAGCCACCTCGCTCCTTATTTTCCCTCTCCCGCATCACCGTATTTGATAGTtagtggaaacgccaaccggatgcttcacattcatacatccggtgaaatatttGTCCCATTGTCCAAGGGGTGTAAAGCAACCGAACAATTTCCGTCTCGCGATAGTCTGAACGAAGGCGAGAGAAGGGTccttaccacagccacaaagtcgtaAACGCGTGTGATGGCGTTGAATGTACACTAGATTACGGTAAATTGCCATTTAGGCCGCCCATTATATGCCTGTGGGCGTGCTGGCAGCAAATTCGATCGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATTGATACATAAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTTGAGAACCTTTGCAGCCCTGTTTCCAATTGTCCACATGGCTGGAAGAATTTATCCAAGTACCAGCCCGTACCTCCATCAACCCCACTGACATAGAAAAGAAAGGAGACCCGTCTAATTTTTTATCTCCCATTAACGATTTAGGGATTCTGCCGAACACCCAGACAtggatccacctgatgtcctGCATTACCAACCACTCTCCAACTTTTCATTACATCAGCtactgttattgtcatgttgtccATATCTGCTAAGACAAGCCAGTGTATGAATCAAATGTTTTTGCATATGAATGAAGTGgaaattagggggggggggggggggg
>TU2262889
CAAATTCGATCGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATTGATACATAAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTTGAGAACCTTTGCAGCCCTGTTTCCAATTGTCCACATGGCTGGAAGAATTTATCCAAGTACCAGCCCGTACCTCCATCAACCCCACTGACATAGAAAAGAAAGGAGACCCGTCTAATTTTTTATCTCCCATTAACGATTTAGGGATTCTGCCGAACACCCAGACAtggatccacctgatgtcctGCATTACCAACCACTCTCCAACTTTTCATTACATCAGCtactgttattgtcatgttgtccATATCTGCTAAGACAAGCCAGTGTATGAATCAAATGTTTTTGCATATGAATGAAGTG
>TU2262892
CGGGGGTTAAAGTCCTGAAAGGATTCAAATAAATCCCGTGTGCCTTTATGAGTTTGCATCCAGCCAACTACTGATGCGCTATGAAGCGGTACCAGCCCGTACCTCCATCAACCCCACTGACATAGAAAAGAAAGGAGACCCGTCTAATTTTTTATCTCCCATTAACGATTTAGGGATTCTGCCGAACACCCAGACAtggatccacctgatgtcctGCATTACCAACCACTCTCCAACTTTTCATTACATCAGCtactgttattgtcatgttgtccATATCTGCTAAGACAAGCCAGTGTATGAATCAAATGTTTTTGCATATGAATGAAGTG
>TU2262891
CAAATTCGATCGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATTGATACATAAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTTGAGAACCTTTGCAGCCCTGTTTCCAATTGTCCACATGGCTGGAAGAATTTATCCAAGCACAGCACATGGATCCTCAGTTGGCATGCAAAACATTCAATCAAAACCAAACGCGTTATAAATAATATCAACGCAGTATGACGAATTAGCCATCCATTGTGTTATATCATACATTTTCTTACATGCTGTCACTGTTGTCAAAAGATtataaacatgttaaataaaGTTACTAACCC
>TU2262893
CAAATTCGATCGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATTGATACATAAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTTGAGAACCTTTGCAGCCCTGTTTCCAATTGTCCACATGGCTGGAAGAATTTATCCAAGTAAGTAAAAAGAACGATGtattattagctaactagctacagggCAGACTAACTTAGGCAGGCTATCTATcttcacatactgtatagatcgCTAAGTGAATGAAATATCACCGTCGGTCTAACACCGAGGTAAAGACCGTTTCAAGTTCGATatgtgacctaatgTCCGCTGACTACCCTTCCATATTGCACACTCTTGTTTGTGTCCTATAAAATCACGCAGTGTAACGTACATTTTTCATAGTTTCAAATttgcaatagctccttggtcatgtcaatTACACACCTAAGAAGCATGCAGTGGATTTACACCCATATTGCATAACCTCTGGTCATGTATCTTCTATATTGTTGTACATTATTATTAGTTTGACAACTAGGGGGTTCAGTCCATTGTTGTGTTTACCCTTTTCTTTAATATTTATCTACAATAATTGGTAGTCCTAAGTACTCATTTcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039533.1 False 1522 mRNA 0.42 3 36705500 36711006
TU2262889 False 407 lncRNA 0.41 3 36705525 36709916
TU2262892 False 332 lncRNA 0.43 3 36705525 36712775
TU2262891 False 340 lncRNA 0.36 2 36708266 36709916
TU2262893 True 622 lncRNA 0.37 2 36708908 36709916

Neighbor

gene id symbol gene type direction distance location
LOC110505855 LOC106611321 coding downstream 32236 36657641 ~ 36673264 (-)
tulp4b LOC106611324 coding downstream 265702 36427772 ~ 36439798 (-)
LOC110505851 LOC106611325 coding downstream 278011 36415448 ~ 36427489 (-)
LOC110505848 LOC106611327 coding downstream 300267 36396400 ~ 36405233 (-)
LOC110504237 LOC106611328 coding downstream 335255 36325431 ~ 36370245 (-)
sash1b LOC106611319 coding upstream 8933 36719939 ~ 36821246 (-)
stxbp5b LOC106611318 coding upstream 128402 36839408 ~ 36891866 (-)
LOC110504239 NA coding upstream 194067 36905073 ~ 36906800 (-)
LOC110504240 LOC106603413 coding upstream 198453 36909459 ~ 36947912 (-)
LOC110505866 LOC106611315 coding upstream 290958 37001964 ~ 37021301 (-)
G1979473 NA non-coding downstream 6365 36698858 ~ 36699135 (-)
G1979428 LOC106603506 non-coding downstream 78267 36623899 ~ 36627233 (-)
G1979420 LOC106611323 non-coding downstream 113628 36585245 ~ 36591872 (-)
G1979385 NA non-coding downstream 160864 36542158 ~ 36544636 (-)
G1979345 NA non-coding downstream 206339 36498883 ~ 36499161 (-)
G1979465 NA non-coding upstream 1485 36712491 ~ 36715698 (-)
G1979481 NA non-coding upstream 14054 36725060 ~ 36733709 (-)
G1979480 NA non-coding upstream 28258 36739264 ~ 36741556 (-)
G1979535 NA non-coding upstream 89591 36800597 ~ 36801350 (-)
G1979536 NA non-coding upstream 90659 36801665 ~ 36802192 (-)
G1979142 NA other downstream 489270 36211946 ~ 36216230 (-)
G1977346 NA other downstream 1604522 35027100 ~ 35100978 (-)
G1977392 NA other downstream 1648574 35053050 ~ 35056926 (-)
LOC110505829 LOC106611279 other downstream 1725993 34970065 ~ 35000444 (-)
G1979607 NA other upstream 254168 36965174 ~ 36965719 (-)
G1979813 NA other upstream 626740 37337746 ~ 37338882 (-)
G1980619 LOC106611366 other upstream 1492435 38203441 ~ 38204163 (-)
G1981678 NA other upstream 2325281 39036287 ~ 39038944 (-)
G1981964 NA other upstream 2845614 39556620 ~ 39569809 (-)
G1979559 NA non-coding upstream 113007 36825782 ~ 36832006 (-)

Expression


Co-expression Network