LOC110505865 (LOC106611339)


Basic Information

Item Value
gene id LOC110505865
gene name LOC106611339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36968501 ~ 36988155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585335.2
gtgtggaaatatatataaaatacagggAAATcttgtttttgactgcactaggCCTTTAAGGTctgaagagagggaagaaaggagggaggcTGGGTCCCAGTCCTTGTTCATTAGAGCTGTGTTTGGAGGGCTGCACTGAGAGGGCGGACTTACATCTGAACCTGACAGCTACACTGTGGTGAATAGCTCAAAAGATTCAAAAATCTGGGAGAAAGTGCCAAGAAGACAGGAGTCTAAGGTTGCGAGTGTCTGACAGTAGATAAgccaaagagcgagagagagagaaactttgAAGATGACACCTGCCAGTTTGGTGTTAGGCTGGTTCCTGCTCGCTGTGAGGACAGTCAACTCTGCTGTGTATCTGGACCCTGAGGAAGAGGGGTCAGGGGGACAGGATGTATTTGTAGTACCTCTGACTCCTTCCTCTCGCCTCGAGCTGAATGAAACTGTCCTCTGCACCAATGACCTGATGAAGGTGGTCATTCCCAGTGCCTTCTTCCTCAACAAAGAGCCACCTGTTTATGTCTGGGATTTGCACCTAAATGACCCGGAATGCCGTGGTGTTGAGGTTGGAGATGACTATGTCTTCAGCATCAAGACTAATCTATCTGACTGTGGGACGATCATGGCATCAGATGATACACATATTATGTTCATAAACACCATACGCAACAACGATTTGGATGTCGTCACAAGGAACTACATCAACATCACGTTCGTCTGCCGTTACCCGATAAACTACATGGTACAGCAGCCCAATGGGGAAAACGTGATCAGAGTGGATGTCAAGACCATCACTCTGAACACAGAAGATGGGAACTTCTCTGTGTCCATGCTGCTTTATAAAGACGAAGACTTTGAGGACAAGTGGACCACTGTGCCCTCCCTGACCCTGGACGACAACATCTATGTTAAAGTGTTGATGATACCGGCTCATCTTTTGCTGCGTGTGGAGAGATGCTGGGCTACCCCAACCAACGACCCGTACAGCAACATCCAGTACACCTTCATCAAGGACAGCTGCCCAGTTTTGTCAAACGAACCGTTGACAGTGCTGAAGAATGGACAGGGGCCAGAGGCTATGTTCAGGATACAAATGTTCAAGTTCGTGGGCAGCTCTTACAAGGATGTGTTTCTCCACTGCAATGTTCAGATCTGTCACAACACACTTGGGGTCTGTCAGCCTAACTGTTCTGGTGAGGATAACAATGGGCGGATGAGAAGAGATGTCACTACGGCCCATACAGTATCTTATGGACCAATCAGGCGACGTCTGCCTGAGAGTGACCAACCCAGCCTGAACTCTGGAGGTGTGCCCTCGGTGGAGACCTTTGTCCTGGGAGGCCTACTTGTGTTCATGCTGCTGTTCACTGGAGTGTTTGGGAGGCTGTGGCTGCGAACCAGGCGCTCCTACCCAACACAGGAGGCTCAGCTCACCTTGTCCAACATACACCACAACTCAGAGGTGGCCCGCTGATCTAACCCAGCAGTTCAAGCAATGAGAACTGATATGAACTGAACTGGTGCACGCAGACACATGAACACACATTACATTTCTGCATAAGGAAAGAGGAAAGTATGAATTGACTGTAGGTTGGGGTGTAAATAAAATCTCACTGTAGAAATTAGAGGGATTTTGaagatgtaaatgagaacatgtctCTGCAAGGAGTGTTCTGTGTTGTTTTGTAGAGAAAAATAAAGGTATTTCAAAGAGCTGTTTATGGCGTTTAATTGTAATATTTCGGACCTTTTCAAGACAACCTATTACAAGTGAGATGTAATACCGTGAGGTTATTCCCCATCTATTTCAGGCGCACGTCTCCAGCCAAACTTCTCTACATGATGACGTAATCAACTAGCGCCACTTGTAGCAACTATCCAAAGATGAGCTAGTTTGCTTTTTACAACACAGCGACTGGAGTCGAAAGACACGATGTGATTATTTGTAACTGTCTAACAGCTACAACATTGCCGAACTAGTTAATTGTGTGTGGCTGGTGTTGTTGCCGAATATAAAGACAAGACTCA

Function

NR:

description
pancreatic secretory granule membrane major glycoprotein GP2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585335.2 True 2034 mRNA 0.47 9 36968501 36988155

Neighbor

gene id symbol gene type direction distance location
LOC118944353 NA coding upstream 115898 36850873 ~ 36852603 (+)
LOC110505847 LOC106611313 coding upstream 143792 36376220 ~ 36824709 (+)
ddo ddo coding upstream 248846 36712283 ~ 36719655 (+)
trnal-uaa-61 NA coding upstream 268810 36699609 ~ 36699691 (+)
LOC110505858 LOC106611340 coding upstream 271310 36693964 ~ 36697191 (+)
LOC110505867 LOC106611342 coding downstream 48098 37036253 ~ 37055807 (+)
vsnl1b visl1 coding downstream 68329 37056484 ~ 37065888 (+)
LOC110505872 tdrd15 coding downstream 124951 37113106 ~ 37124247 (+)
LOC110505874 ankrd66 coding downstream 136552 37124643 ~ 37131713 (+)
LOC110504241 dnah14 coding downstream 173232 37161387 ~ 37222396 (+)
G1978507 NA non-coding upstream 25916 36942256 ~ 36942585 (+)
G1978506 NA non-coding upstream 28245 36939515 ~ 36940256 (+)
G1978463 NA non-coding upstream 94134 36869938 ~ 36874367 (+)
G1978458 NA non-coding upstream 98678 36837771 ~ 36869823 (+)
G1978477 NA non-coding upstream 101371 36866639 ~ 36867130 (+)
G1978525 NA non-coding downstream 8202 36996357 ~ 36998622 (+)
G1978563 NA non-coding downstream 51424 37039579 ~ 37040215 (+)
G1978571 NA non-coding downstream 83651 37071806 ~ 37073299 (+)
G1978600 NA non-coding downstream 147357 37135512 ~ 37135995 (+)
G1978080 NA other upstream 940764 36026533 ~ 36027737 (+)
G1976689 NA other upstream 2237190 34730027 ~ 34731311 (+)
G1976680 NA other upstream 2264607 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2486580 34481519 ~ 34481921 (+)
hivep2b LOC106611354 other downstream 276625 37264780 ~ 37311200 (+)
G1980026 NA other downstream 732979 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1540452 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1577723 38565810 ~ 38575881 (+)

Expression


Co-expression Network