LOC110505864 (LOC106611316)


Basic Information

Item Value
gene id LOC110505864
gene name LOC106611316
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36987964 ~ 36993882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585334.2
TACATGATGACGTAATCAACTAGCGCCACTTGTAGCAACTATCCAAAGATGAGCTAGTTTGCTTTTTACAACACAGCGACTGGAGTCGAAAGACACGATGTGATTATTTGTAACTGTCTAACAGCTACAACATTGCCGAACTAGTTAATTGTGTGTGGCTGGTGTTGTTGCCGAATATAAAGACAAGACTCATTTGCTGtgtcgttttttttttcttcttacgGGCCACATCACCCCTAACCCCCCACACCCTTTTAAATCCAGAATATCAACACAACAAAGATGGAGGAGCTCCATACCCACTGCCTGAACTGTGTGAACCGGAGGTGTATGATTCGCACAGAGACTGGTATGTCCTGTGATCTCATTGGCTGTCCTCTTGTCTGTGGGGCAGTCTTCCACTCCTGTAAAGAGGAGGAGCATCATTTACTATGCCCGTTTGAAAGAGTGCCTTGCCTCAACACTGGATTTGGGTGCCCTTTCACTATCCCCCGGATTAAGATGGCTAAACACCTTGAGACGTGCCCGGCCAGTGTGGTGTGTTGCACCATGGAGTGGAACCGTTGGCCTGTGAGCTATTCAGACAGGAAGTCCTATGAGCATTTGAGCAATGTTGAAGTGGTGGAGCAGCTAGACATGGCCCTGGCTCTGCAAGATCAGAGGATGCTACTGGAGTCTCTTAGAGTCACCACCAACACGTCAAAGAACAGATCTAGTAAATCGGCTGAGGAAACGTGTTACAAGATCGCTGATGTAATGTCAAGTGTACCAGAGACTGACATTAGTAATGGAACGGTTGAAATGGATGAGGCTGCTGCTTTGACTAATGGAGTGGTTGAAATGGAAGATGATGATGAGTCTTATAGTGAGGTACACAAAATAAAGTTAGCAGCTACCTTGGCTGTCCTCAGAACTGCCAAGGACATAGACTTGATCAGTGTAAATGTTGAAAacggtgagagagaaggggttcTCCATAGGGGAGAGGACAGTGATAATGATAATCATAATGATTTGAAGAATGTAGAGATGAAGGCAAGTGACACAGAGTCGGGCTGTGAGCTCGGAGCAGTGGGCGGAGTCGGAGTGGACTGTGGATTTGGAACAGACGGGCAGGGAGACGAGAGCTATTGGATAGAGTCTTCAGAGGAAGTGGAGAAGGACCATGTGATGGGTCTTGCTGAGGTGGGTTGTCCTCCTCTCAGTAATGGTTTCAACCATGCAGGAGACAACCAAAATCACTTGAGACATCGTGAGTGGATGGATCTGAGCAGATCTCTACCCAGACGCTCTGAAGTCAACAGGTTTTCAGACTTCAGGCTGGTGATGCCTTATCTCTCCATGCCTAATATAGTAGCACCCCTGGAGACCTCTGggccccaccctccaccactacccATCCACCTGCCTCTTCCCATGCCTCTCCCTAATCTGGAGCCCTACAACATGCTCCAGCATCTGCCCTTGGAGATAGAAGACAGGTGGCTGGAGAGGAAACTTCAGAACCTCCAGGTGCTCAGAGGGATGAGTGTGTTTACATTTAACGGGCGCAGGGCTCTGATGTCTGACCCCTATCTGTTCAGAGCCAAAATGGAGGACAAGTCAGTGGACACCTCAGACCTGGAGGTAACTGACGATCCATTGGGGCTCCATGGAATCGACCTAATCACGGCAGCACTGCTCTTCTGTCTGGGGGACTCCCCTGGGGGCCGCAGCATCTCAGACAGCAGGTTTGTAGACGGCTACCACGTCGACTTTGGTACCCAGACCTTCTCCTTCCCCTCGGCTATACTGGCCACTAACACCATGGTGGGGGATATCGCCTCAGCGTCGGCCTGTGATCACGCCAGCCCTCAGCTTTCCAACCCCAGCCCCTTCCACTCTCTCCGGCTGGACCTGGTTCTGGAGTGCGTGGCCCGTTACCAGACCAAGCAGCGCACCATGTTCACCTTCGTGTGTGGACAGCTGTTCCGCAGGGACGAGTTCTCTTCGCATTTCAAAAATGTTCACGGGGACATCCACGCCGGCCTGAACGGCTGGCTGGAGCACCGCTGTCCCCTGGCCTACTACGGCTGCACCTATTCCCAGAGACGCTTCTGTCCCTCTGTTCAGGGCTCCAGGATCATCCATGACAGACACCTGGGCTCGTTTGGGGTGCGGCCCGACATGCCTCCCCAGTACGGCGATAAAACCCTCCCCAGGAATGCCTGTCGGTTCGGGTCCACCTGCGACCACCTGAGCTCCTTGCCCTTCGAGCTGCAACAGTATGTGGCCAGTTTCCTGGATGGCTTCAGCCTGTGCCAGTTTTCCAGGGTCTCTCGGACAATGAGGGATGTGTGTGGCAGTTTACTGCAGTCCAGGGGCATGGTGGTGCTGCTCTGGGAGAACACACGAAGGCCTGATGGGTCATCCTCATGGCAGATCCAAAACAAGGTGTGGCGATTTAGCACAGCCTTCGGTACAGTGAAGGAGTGGAAGTTTGCCAACATCACCAGTATGGCCGACCATCTGAAGAAGTGCAAGTTTAACACCATCACCTGTCGGGACGAGGCCATCCCTCTGCCCTGCATGTGCTTATCCAGAGAGCTCACCAAAGAGGGACGTTCACTGCGCTCAGTCCTCAAGCCAGTATTATGAGTAACTCTATAAAAGGGTTAGAGTCCATGGGTTATGTCTAAAATGGTACCctattaaaagtagtgcactatgtaagcgTTAGGGTACTATTATGGACGTAGCTCATTTCAATCAATTCAGTTCTTACAGAAGTACTCCCAGAATTCACTGAATTGAAATGCACTTCCAACCCTGCTCTATGATAAGCAAATACAAAATGCTGCTAT
>XM_036962602.1
CACTTGTAGCAACTATCCAAAGATGAGCTAGTTTGCTTTTTACAACACAGCGACTGGAGTCGAAAGACACGATGTGATTATTTGTAACTGTCTAACAGCTACAACATTGCCGAACTAGTTAATTGTGTGTGGCTGGTGTTGTTGCCGAATATAAAGACAAGACTCATTTGCTGtgtcgttttttttttcttcttacgGGTCTGTAACATGGATATATGGCCTTGTGGGAACTCTAACCCTATCAAGGCCACATCACCCCTAACCCCCCACACCCTTTTAAATCCAGAATATCAACACAACAAAGATGGAGGAGCTCCATACCCACTGCCTGAACTGTGTGAACCGGAGGTGTATGATTCGCACAGAGACTGGTATGTCCTGTGATCTCATTGGCTGTCCTCTTGTCTGTGGGGCAGTCTTCCACTCCTGTAAAGAGGAGGAGCATCATTTACTATGCCCGTTTGAAAGAGTGCCTTGCCTCAACACTGGATTTGGGTGCCCTTTCACTATCCCCCGGATTAAGATGGCTAAACACCTTGAGACGTGCCCGGCCAGTGTGGTGTGTTGCACCATGGAGTGGAACCGTTGGCCTGTGAGCTATTCAGACAGGAAGTCCTATGAGCATTTGAGCAATGTTGAAGTGGTGGAGCAGCTAGACATGGCCCTGGCTCTGCAAGATCAGAGGATGCTACTGGAGTCTCTTAGAGTCACCACCAACACGTCAAAGAACAGATCTAGTAAATCGGCTGAGGAAACGTGTTACAAGATCGCTGATGTAATGTCAAGTGTACCAGAGACTGACATTAGTAATGGAACGGTTGAAATGGATGAGGCTGCTGCTTTGACTAATGGAGTGGTTGAAATGGAAGATGATGATGAGTCTTATAGTGAGGTACACAAAATAAAGTTAGCAGCTACCTTGGCTGTCCTCAGAACTGCCAAGGACATAGACTTGATCAGTGTAAATGTTGAAAacggtgagagagaaggggttcTCCATAGGGGAGAGGACAGTGATAATGATAATCATAATGATTTGAAGAATGTAGAGATGAAGGCAAGTGACACAGAGTCGGGCTGTGAGCTCGGAGCAGTGGGCGGAGTCGGAGTGGACTGTGGATTTGGAACAGACGGGCAGGGAGACGAGAGCTATTGGATAGAGTCTTCAGAGGAAGTGGAGAAGGACCATGTGATGGGTCTTGCTGAGGTGGGTTGTCCTCCTCTCAGTAATGGTTTCAACCATGCAGGAGACAACCAAAATCACTTGAGACATCGTGAGTGGATGGATCTGAGCAGATCTCTACCCAGACGCTCTGAAGTCAACAGGTTTTCAGACTTCAGGCTGGTGATGCCTTATCTCTCCATGCCTAATATAGTAGCACCCCTGGAGACCTCTGggccccaccctccaccactacccATCCACCTGCCTCTTCCCATGCCTCTCCCTAATCTGGAGCCCTACAACATGCTCCAGCATCTGCCCTTGGAGATAGAAGACAGGTGGCTGGAGAGGAAACTTCAGAACCTCCAGGTGCTCAGAGGGATGAGTGTGTTTACATTTAACGGGCGCAGGGCTCTGATGTCTGACCCCTATCTGTTCAGAGCCAAAATGGAGGACAAGTCAGTGGACACCTCAGACCTGGAGGTAACTGACGATCCATTGGGGCTCCATGGAATCGACCTAATCACGGCAGCACTGCTCTTCTGTCTGGGGGACTCCCCTGGGGGCCGCAGCATCTCAGACAGCAGGTTTGTAGACGGCTACCACGTCGACTTTGGTACCCAGACCTTCTCCTTCCCCTCGGCTATACTGGCCACTAACACCATGGTGGGGGATATCGCCTCAGCGTCGGCCTGTGATCACGCCAGCCCTCAGCTTTCCAACCCCAGCCCCTTCCACTCTCTCCGGCTGGACCTGGTTCTGGAGTGCGTGGCCCGTTACCAGACCAAGCAGCGCACCATGTTCACCTTCGTGTGTGGACAGCTGTTCCGCAGGGACGAGTTCTCTTCGCATTTCAAAAATGTTCACGGGGACATCCACGCCGGCCTGAACGGCTGGCTGGAGCACCGCTGTCCCCTGGCCTACTACGGCTGCACCTATTCCCAGAGACGCTTCTGTCCCTCTGTTCAGGGCTCCAGGATCATCCATGACAGACACCTGGGCTCGTTTGGGGTGCGGCCCGACATGCCTCCCCAGTACGGCGATAAAACCCTCCCCAGGAATGCCTGTCGGTTCGGGTCCACCTGCGACCACCTGAGCTCCTTGCCCTTCGAGCTGCAACAGTATGTGGCCAGTTTCCTGGATGGCTTCAGCCTGTGCCAGTTTTCCAGGGTCTCTCGGACAATGAGGGATGTGTGTGGCAGTTTACTGCAGTCCAGGGGCATGGTGGTGCTGCTCTGGGAGAACACACGAAGGCCTGATGGGTCATCCTCATGGCAGATCCAAAACAAGGTGTGGCGATTTAGCACAGCCTTCGGTACAGTGAAGGAGTGGAAGTTTGCCAACATCACCAGTATGGCCGACCATCTGAAGAAGTGCAAGTTTAACACCATCACCTGTCGGGACGAGGCCATCCCTCTGCCCTGCATGTGCTTATCCAGAGAGCTCACCAAAGAGGGACGTTCACTGCGCTCAGTCCTCAAGCCAGTATTATGAGTAACTCTATAAAAGGGTTAGAGTCCATGGGTTATGTCTAAAATGGTACCctattaaaagtagtgcactatgtaagcgTTAGGGTACTATTATGGACGTAGCTCATTTCAATCAATTCAGTTCTTACAGAAGTACTCCCAGAATTCACTGAATTGAAATGCACTTCCAACCCTGCTCTATGATAAGCAAATACAAAATGCTGCTAT

Function

NR:

description
F-box only protein 30-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10307 FBXO30; F-box protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585334.2 False 2843 mRNA 0.51 3 36987964 36993882
XM_036962602.1 True 2865 mRNA 0.51 4 36987990 36993882

Neighbor

gene id symbol gene type direction distance location
LOC118944353 NA coding upstream 135361 36850873 ~ 36852603 (+)
ddo ddo coding upstream 268309 36712283 ~ 36719655 (+)
trnal-uaa-61 NA coding upstream 288273 36699609 ~ 36699691 (+)
LOC110505858 LOC106611340 coding upstream 290773 36693964 ~ 36697191 (+)
rmnd1 LOC106611322 coding upstream 332086 36645560 ~ 36655878 (+)
LOC110505867 LOC106611342 coding downstream 42371 37036253 ~ 37055807 (+)
vsnl1b visl1 coding downstream 62602 37056484 ~ 37065888 (+)
LOC110505872 tdrd15 coding downstream 119224 37113106 ~ 37124247 (+)
LOC110505874 ankrd66 coding downstream 130825 37124643 ~ 37131713 (+)
LOC110504241 dnah14 coding downstream 167505 37161387 ~ 37222396 (+)
G1978509 NA non-coding upstream 10362 36975174 ~ 36977602 (+)
G1978507 NA non-coding upstream 45379 36942256 ~ 36942585 (+)
G1978506 NA non-coding upstream 47708 36939515 ~ 36940256 (+)
G1978463 NA non-coding upstream 113597 36869938 ~ 36874367 (+)
G1978458 NA non-coding upstream 118141 36837771 ~ 36869823 (+)
G1978525 NA non-coding downstream 2475 36996357 ~ 36998622 (+)
G1978563 NA non-coding downstream 45697 37039579 ~ 37040215 (+)
G1978571 NA non-coding downstream 77924 37071806 ~ 37073299 (+)
G1978600 NA non-coding downstream 141630 37135512 ~ 37135995 (+)
LOC110505847 LOC106611313 other upstream 592748 36376220 ~ 36824709 (+)
G1978080 NA other upstream 960227 36026533 ~ 36027737 (+)
G1976689 NA other upstream 2256653 34730027 ~ 34731311 (+)
G1976680 NA other upstream 2284070 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2506043 34481519 ~ 34481921 (+)
hivep2b LOC106611354 other downstream 270898 37264780 ~ 37311200 (+)
G1980026 NA other downstream 727252 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1534725 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1571996 38565810 ~ 38575881 (+)

Expression


Co-expression Network