gcfc2 (gcf)


Basic Information

Item Value
gene id gcfc2
gene name gcf
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 37774491 ~ 37792377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585364.2
ACCCCACCCGAGTCCCCGACAATGACTAACTACATGACCCAAAATGCATTTCGAGAGGATTGCCGACAGATTTACTTCTTCTCAAATGTATTTCCGACTTACCGTATTGCGATTTATTTACTCGGCGATCACCTTGTCCTGAAAATGTTCAACAAGAAACCGCGAAGAAACTTCAGGCAAAGGAAAGGAAAATCGAGCGATGAAGATGAACAGAAGAGCGGAGAGGATGATGGAAGTAAAACACAAGCTACCGCTTCTAGCATAAAGCCCGTCAAGTTGCCGCAGAATCGGGGGATCTCATGCAGTTCCAAGCGGGAGGCGAAGTCACCCAAGTCGGACTCGAGTGGTGCTGAAGACGCGGTAGAATATGGTACTAGTGGGCCGTTCGTTGGCACTAGACCGCCTAACAGTAAAGAGGACAAGGATGGACGGAAGAAGAAAGGAAACGTTCTCAGCTTCTCTAATGAGAAAGAAGGATCTGAGTTCAAACTAAAGAAATCGTCAGATAAAGCTGTGGTCTTCCAAGCCAGGAGAAAGGAGGCTTCCCCTGCAAAGACCTCCCGGCCTACTGCCAGGAAAGATGTGACTGTGGTTGTGTCCCAGAAAGAAAGGTCCGGAGAAGAACTGTCATCAGACAGTGACGGAGAGGAAGGCGCCAAGTCATCCACATCCAGCTCTGCCTCCTCCATGTCCTCCACATCCTCCAAATCCTCCACTCAGAAACACAAACCAGTGGTGATCCCAGATGCAAGAAGGATCCAGGCGGCCAGAAGGCAGCGTCAGGCGGCCAGAGCCCAGAAAGACTATATATCCcttgggagagatggggagagctCCCCCCGGACACCAGACCAGGACCTGGAGGAACGCACTGACGAAGAttatgatgacgatgatgagcCAGACGACCATGAACGCAGGATTGAGTTTGCCCCGCGGTCCAAAACCATCAGGGAGAGGATAGCAGAGAAgatggGAGGTAGTGGTGCTAGTGAGTCTGACGACCAGGAGAGCGAGGACAACAACCTCTGGGAGGAGCAACAGATTGGAAAGGGAGTCAAGAGACACCCTGGGGAGCAGAGTCCATCAGGCAGTGAGGGCAGTGGCTCTGTGAGGAGCGGTAGTAGTAGACGGAAACAGAGAGTCAATATCCCAGAGTGTCTGCCTCTCATCAGCCTCAGCGTGGTGAAGAAGAGGATCACTGGGAAaCTGTGTGATCTGAGGGAGGTCCACAGGGCTCATGAGGCAGACCTGAGGAGGATGGAAGTGGACATGGACAGCTCTAGAACCTCTCTGGAGAACCTGGAGAGTGGTTCCTCCGACCGCCAGCTTCAATTCTACCGGGACACCAACACTTACATTCAGAACCTGGTGGAATGTCTCAGAGAGAAGGTGGTAGAGATCAACAGTGTGGAGGTGGACATGCACACTCTTCTGTCTGACCAGGCGGAGGTACTGTTGTCAAGGAGACGAGAGGCTATACGGCAGAAGTCATCTTGCCTCCAGCAGCTCAGCTaTGCCACTGATCCACAGAGGGAAGGAGACCCCGGGGAAAGTGGGAATGAAGAAACAAATAAAAGTGAGTCAGGAGAGCCGGGTGAGGAAGACTATGGTAGCCTGACGGCCGACAGCGAACCTTCTCCTGAGGAAGAGGCAGAACTGCAGAGGGCGAGAGAGGAGATCCTGAGCAGGTCCCAGGATGTGTTCTGTGACGTGCAGGAGGACTTCTGGGAGGTGAAGAAGGTTCTGTCTCGCTTCAACGAGTGGAGGGTAGCCTTCTCCGAGTCCTACCACTCAGCCTACATCAGCCTCTGTCTACCCAAACTACTCAACCCGCTCATCAGACACCAACTTTTAGGCTGGAACCCCCTACAGGCTGCAGGAGAGGACTTTGAGGCCCTGCCGTGGTTCTCTGCTGTAGAGACGTTCTGTCACGGCCTGGGCTACCAGGAGGCAGACCACACTGACAGGAAAACACTGCCTGCAATCATAGAGAAGACTCTCCTTCCCAAGATACAAGGTTTTGTGGAGTTGGTGTGGGACCCTCTGTCCAGCCgtcagtctctgtgtctgtctgagctgTGTCACAGACTGCAGGATGACTACTCTCTGTTTGAGGGAGAGCAGAGCAAACCGGTCAAGGCCTTTGTTGAAGCAGTGAGTGGTAGATTGAGGAGTTCTGTGGATGATGACATCTTCATCCCTCTATACCCTAAGAAGTTTTTAGATGACAAGTCCTCTCCACAGAGGAGGTTCAGAGACCAGCAGTTCTGGACAGCTGTGAAGCTCCTAGGTAACATTGGCCAGTGGGATGGGTTGATATCTGAACATGTTCTGAAGGAGCTAATGTTGGACAAACTCCTGAACCGCTACCTGATGATGACGCTACTCAACGAGACCCACTCACATGACTCTGTCCACACATGTAAAAAGGTCGCGGTGTGTTTTCCTAAGTCCTGGTTTAAAGACCTGAGCTCCTGTCCCTCTCAGCTGAAGTCCTTCAGTGACCACCTCCTCCAGACTGCCCATTCAGTCTGCAAACAGCAGCCTGACCACCCCAACACACGGGCTGTGGTGAGCGACGTGCTGACTGTTTTGGGAAGCATCCAGGCATGGGACAAGGTAGAGACGATATCGGACAAATACCATTACCAAGACCTGGTGGACACACTCAAACTGTCCTAGTGTGTCCTACTGTGTCAACCATACATCATGTAATATGTGTTGcaactttatttgtattttttaaatctatAAATAAATATTTGAGATGTTTGAACAGA

Function

symbol description
gcf GC-rich sequence DNA-binding factor

NR:

description
GC-rich sequence DNA-binding factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585364.2 True 2783 mRNA 0.51 18 37774491 37792377

Neighbor

gene id symbol gene type direction distance location
pfn4 pfn4 coding downstream 4002 37766006 ~ 37770489 (-)
LOC118944331 LOC106611362 coding downstream 9517 37744412 ~ 37788096 (-)
LOC110505887 LOC106611359 coding downstream 32008 37730685 ~ 37742483 (-)
LOC110505888 LOC106611360 coding downstream 44551 37721134 ~ 37729940 (-)
LOC110504244 kcnk10 coding downstream 108276 37642855 ~ 37666215 (-)
LOC110504246 LOC106611364 coding upstream 115592 37907969 ~ 37915886 (-)
LOC110504248 LOC106592147 coding upstream 596449 38388826 ~ 38440474 (-)
LOC118944133 NA coding upstream 705604 38497981 ~ 38499513 (-)
LOC118944132 NA coding upstream 707219 38467126 ~ 38523197 (-)
LOC110505895 nrxn3 coding upstream 841061 38629768 ~ 39248183 (-)
G1980227 NA non-coding downstream 45073 37728961 ~ 37729418 (-)
G1980224 NA non-coding downstream 57960 37715802 ~ 37716531 (-)
G1980212 NA non-coding downstream 78960 37695210 ~ 37695531 (-)
G1980211 NA non-coding downstream 81248 37693014 ~ 37693243 (-)
G1980210 NA non-coding downstream 82623 37691313 ~ 37691868 (-)
G1980256 NA non-coding upstream 2405 37794782 ~ 37795005 (-)
G1980257 NA non-coding upstream 2810 37795187 ~ 37795421 (-)
G1980278 NA non-coding upstream 62080 37854457 ~ 37907822 (-)
G1980299 NA non-coding upstream 100931 37893308 ~ 37893826 (-)
G1980303 NA non-coding upstream 103782 37896159 ~ 37896696 (-)
G1979813 NA other downstream 435609 37337746 ~ 37338882 (-)
G1979607 NA other downstream 808772 36965174 ~ 36965719 (-)
LOC110504237 LOC106611328 other downstream 1427436 36325431 ~ 36370245 (-)
G1979142 NA other downstream 1558261 36211946 ~ 36216230 (-)
G1977392 NA other downstream 2717565 35053050 ~ 35056926 (-)
G1980619 LOC106611366 other upstream 411064 38203441 ~ 38204163 (-)
G1981678 NA other upstream 1243910 39036287 ~ 39038944 (-)
G1981964 NA other upstream 1764243 39556620 ~ 39569809 (-)
G1982029 NA other upstream 1827488 39619865 ~ 39620209 (-)
G1982657 emilin1 other upstream 2059806 39852183 ~ 39858120 (-)

Expression


Co-expression Network