LOC110504248 (LOC106592147)


Basic Information

Item Value
gene id LOC110504248
gene name LOC106592147
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 38388826 ~ 38440474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962736.1
ATGGGGCCTACAGGGGAACAGCCTGGGATTTACATATCAGATGATGAAAGTCTGAGGAGTCTGGAGAGACATTCTTTTCACAAGCTGCCCAAGGCTATCCACATAGAGATAAGGGGTATCAGGAGCCTGTCTTACATTGACCCAGAGGCATTCAAGGACCTAACAAACTTGAAGTACCTGGGTATCTTCAACACCGGCCTGCCCTCCTTCCCTGCTCTGGGCCAGATCCGTTCCAGCCAGGACGACTTCATCTTggaaaTTGTGGATAACCTCTTCATCAGAGAAATTCCTGCCAACTCATTCAATGGGATCTCAGAGAATGAAATCACCCTGATGCTGAACAGCAACGGTCTGACGGACATCCAACCCTACGCCTTCAATGGAACCAGACTGGAGGAAGTGTACCTCTATAGGAATGTGGATCTGGTGCGGTTGGACGAGAGGACATTTTCTGGCGTGATCAGCGGGCCAACTCTTCTAGACGTTTCCGAATCAAGAGTGAACTCCTTACCCACAATGGGTCTGGAGGCTGTTCAGAAACTCAAAGCTAAAAACACTTGGGCCCTCAAGAAACTACCCCCCCTGAGGGCCTTCCAGCATCTGCAGAGTGCTGAGCTCACCTACCCCAGTCACTGCTGTGGACTGAGCaaagtgaagaggaggagaggACACGTGGAGTCCGTCATTTGCAACCTGACCAGCTCTACAAGACGACAACAATCAACTAGGCCCTCTGGAACCCCCTCTGAGGCCTACGAGGGGCAGCACCCCAAGCACCCTCATCCCACCAGCAGCAACCCTTCCCCCCGAGACCCCCAGCACCATTATCCCACCAGAAGCAGCCCCTCCCCCCGAGacccccaacacctccatccCACCAGCAGCAACCTCTCCCCCCGAGacccccaacacctccatccCACCAGCAGCAACCCTTCCCCCCGAGACCCCCAGCACCATCATCCCACCAGAAGCAACCTCTCCCCCCGAGACCCCCAGCACCATCATCGCACCAGAAGCAGCCCCTCCCCCCGAGACCCCCAACACCCCCATCCCACCAGCAGCAACCTCTCCCCCCGAGACCCCCAGCACCATCATCCCACCAGAAGCAGCCCCTCCCCCCGAGacccccaacacctccatccCACCAGCAGCAGCCCCTACGACTACCAGTACTACTACGATAACTACAGCTGTCCCCCCTCCGGTGAGTGCttctacatagtgttccctacggAGGGCCCAGACGAAGGCTTTGACTATACCCTGTGCGATGACGACAGGGAGGACCAGGGGGTCCCCTGCACCCCTCTGCCCGATGCCTTCAACCCCTGTGAGGACGTGATGAGCCTGGGCTTCCTGCGGGTGTCTGTTTGGCTGGTTAGCTTGCTAGCCGTTCTGGCTAACCTCTTGTTCCTGCTCATCCTGCTGACCAGCCACTACAAACTGACCATCACCCGCTTCCTCCTGTGCAACCTGGCCATGGCAGATCTCTTCATGGGTGTGTACCTCTTGCTCATCGCATCTGTGGACCTCTACACGCGCTCCCAGTACCACCACTACGCCATTGACTGGCAGACTGGTGCCGGATGCCAACTGGCTGGGGTGCTCACAGTGTTCGCCAGCGAGCTGTCGGTCTACACGCTGACTGCCATTACTCTCCAGCGCTGGCACGCCATCACCTTCGCCATGAGGCCCGAGAGGAAAGTGCGACTACGCCACATAGTTGTGCTAATGCTAGCCGGATGGCTGCTCTGCCTGGTGTTAGCCGTGCTACCGCTAGCTGGCGTTAGCAGCTACCAGAGGGTTAGCATCTGCTTGCCCATGGACACAGACTCAACCGCGGCCATGGTCTACGTGGTCACCCTGCTAATGCTGAACGTGCTCGCATTCGTGTTGGTGAGCGTGTGCTACGTACACATCTACTGCATGGTGCACAACCCACAGCACCCGTCGAGCCGAGGGGACGCCAGCATGGCCAAACGCATGGCCGTGCTTATCTTCACCAATTTCCTGTGTCTGGCACCCATCTCCTTCTATGGCCTGTCTGCTGTGCTGCACCACCCACTCATCACCGTCACCGACTCCAAGgtgcTGCTGGTGATATTTTACCCTTTGAACTCATGTGCCAACCCCTTTCTGTACGGTATCCTGACACGAGCCTTCCACGGGGACGTCCTGATTCTGCTGAGCCGCTTGGGGCTGTGTCAACGGCAGGCCCAGCTCTTCCGAGGAGCGCAGTTCGATGTGGGCCGCCCCGCTGGGGGAAAGAGGCGCCAAGGGGTCCCCCGTCTTGGAGCCCACATACCCCAGATCCTGGAGCTCCGCAAGAGGCAGAGACCGTAATGACACCAAGGAGCAGGTCATCGAATTGGAGGGTCCCAACGCGATGTCAAGCACCAGGGAGAATTACAACCACAGCTGAGAGGCTGGATTTTGTTGGTTCTCCAGTTGAATGGTGGTTCCCGTACCTTTCGGACAGACAAAACCATGTATCAGGTCCCAAttaagggctggattcaatccatATTGCAGAAGTATCACGGAAGGTCTACATTCAAATGTAAAGGTAATCTTTgtttgagccgacatatgcagcgtttatagtgaatgcagtctctgtgaatgcaggaacattgcctttcaATTTCAATGTGTATCTTCCGCAATACGGATTGAATTGAGCCCTTAGTCTTGATCCGTGATCTAAGCGTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGGAGCTTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGGAGCTTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGCAGCGTGACTGGCCATTATGACCAACCAGGAATTGTAAATTCAGGAGCTTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGGAGCGTGACTGGCCATTATGATCAACCAGGAATTGTAAATTGAGGAGTGTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGGAGCGTGACTGGCCATTATGACCAACCAGGAATTGTAAATTGAGGAGCTTGACTGGCCATTATGACCAACCAGGAATTGTAAATTTAGGAATTGGACATGGAATGTAAATGGCccttttaatatatatattgtgtTGTTTTTAAATTCGTGTTGTATATTGCATTTCTGAGTTGACTAGAATGAAACTAAAGCAGAGGTGCTACTCACCTTGTTTGAGGAACATTGGAGAGAACAAATCAACAGGAAAAAACTGAATATGCAAGACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAAGTGTGTAGTAGAGAACCAGCTAGAGGTGTATAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGGGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGAACCAGCTTAGAGGTGTGTAGTAGAGCACCAGCTAGAGGTGTGTAGTAGAGCACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTAGAGGTGTGTAGTAGAGAACCAGCTGGTATCCTCGGACTGTCTGAGTGTGTTAGATATATTGTTTTTGCAGAGGCTTTACAAGGGCTCTCTTAACACGTGGAATTTGAATTGTGTGCCCTCGTAATTTACATAGGTGAAATTGACAGCAAAGCTATAGGCTTCTGTTGGGCTGAACCTTCAGAGTCCATGTATGCACTTTAGAACGTGTTAATTATAGCCCAGGCTTTTTTCCCCGTTTTTGTTTGGCAATTTTTGTCATGTTAAATATTGGCCACTATCGGGAGCCACCctcagtaatacccacatacatttataACAGTCACTTTacttacatttacattgtagtcatttatcagacgctcttatccagagtgacttacagttcaCAGCCACatacatatcacaggcatagaaatTACATTTTTACTCTAACTTAGCTAtcagtagagtcagagctagaaggtcttgtagtggatacgactggaagccagtggagtgtgcggaggagcagGGGGACATGAGAGAACTTGAGAAAGTTGAAAACCAGGGGTTGGATGGCACAAGCCTGGAGCCCAGCCAACTGTGAGTTGCAGTAGTGCAGATGGGAGATGACaggtgcctggattaggacctgcgccgcttcctgtgtgaggtggGGTCATACTCTACGGATGCTGTAGAGCACGAACCTGCAGTAGCGAGTCACTGATGTTTTACAGAGAACGACACAGTGTtatccagggtcacgccaaggttctttgcactctgggagggcgaCACTGGAGTTGTCAACCGGGATGGAGAGGTCTTCAATTTGTACCTTTTGCATCATTCCTTTAACCTTTCTGTCCTCTGTCATGTCCTTGTCGTTGTTCCTGAGGGTCACTAGCATTAGTGGATTATATTAGGCTAACGTTAGGCTAACGTCATTATGGAACTCAGACCACCACATAGCAGGTTAAACCTGGCACCTGGCTAACGGTTCACAACGGCTGGAAGGTTGCCATACAGTTCCATGATTGGTGGGAATTatggtagatttataggactgatGTTCAACCCCTATTTACATGTTTTATCCACCTTCCAATATTATATGGATTGAATTTGAATATGAtaactttcaggatgaatcaaaccactgcaTTTTTCATTCATCAATATATTTATTGCGTAAATGATCTCAAAACCCGTTTTATTTCATGAATCATACATACTATCCTGACCCTAAAATGCCCCTAAATAATCTACAAAACCAGAGTATCTACGGAGACGAATATGCATAGATGGcattctttcattgatccctattTTCTGAACCCATTCTCCCCCAAAAATGTTGTGTGTATTGACAAAATACAAATTAGAAGGtacactgtatttaaagggatggcttaaaaTAAATGTACTGAAATCCCTACTGAATGAAAACTCCACGAGGAAATCTGTTGGCCaccaagtgggagggttttcagcagttGAATTCCATTTATTCAGCATGCAAAATGGAACCACGCCTGCAAAGCCTGTTATGTGCCTTCATAAGGTAAGTCTCAACACAAACTACTGAGAAGTGACTAAGAAATCCCAATCAGTCCCTTTATGAACACAGGTGAGAAAGTGAGGTTCAAAAATCTTCTATACAAGAGCGAGGTAATGTTGATTACCCTCACTGTGTAGCATGCATACATCTCCATTCAGTGCATAGTAAGTAATGCCGAACTTGGCTCACTCGTACCATATAGTATCACACTCAGATACACATACCAGCGGCGCCGTCTATTGGCTTGGCAACATCTCATAACGTCTTCCTTCACACAACAAATGAAGATAACTCCTCATAAACAGGAGAACTGGGGTTAGACCCTTGCCAATGAAAACATTACACtgttaacaaaaaaatataactGTGTACTTATTTAAAGTACTTTCAATAAGCATCAACTTTAAAGTCAA

Function

NR:

description
LOW QUALITY PROTEIN: thyrotropin receptor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962736.1 True 6585 mRNA 0.49 10 38388826 38440474

Neighbor

gene id symbol gene type direction distance location
LOC110504246 LOC106611364 coding downstream 472940 37907969 ~ 37915886 (-)
gcfc2 gcf coding downstream 596449 37774491 ~ 37792377 (-)
pfn4 pfn4 coding downstream 618337 37766006 ~ 37770489 (-)
LOC118944331 LOC106611362 coding downstream 623852 37744412 ~ 37788096 (-)
LOC110505887 LOC106611359 coding downstream 646343 37730685 ~ 37742483 (-)
LOC118944133 NA coding upstream 57507 38497981 ~ 38499513 (-)
LOC118944132 NA coding upstream 59122 38467126 ~ 38523197 (-)
LOC110505895 nrxn3 coding upstream 192964 38629768 ~ 39248183 (-)
LOC110505899 LOC106611374 coding upstream 983991 39424465 ~ 39427601 (-)
LOC110505906 LOC106603387 coding upstream 1527413 39967887 ~ 39980053 (-)
G1980707 NA non-coding downstream 11898 38376529 ~ 38376928 (-)
G1980697 NA non-coding downstream 19884 38368676 ~ 38368942 (-)
G1980677 NA non-coding downstream 27943 38345481 ~ 38360883 (-)
G1980630 NA non-coding downstream 165779 38222805 ~ 38223047 (-)
G1980623 NA non-coding downstream 178194 38210410 ~ 38210632 (-)
G1981338 NA non-coding upstream 8449 38448923 ~ 38449126 (-)
G1981349 NA non-coding upstream 28309 38468783 ~ 38469207 (-)
G1981354 NA non-coding upstream 36890 38477364 ~ 38479985 (-)
G1981363 NA non-coding upstream 83026 38523500 ~ 38523724 (-)
G1980619 LOC106611366 other downstream 184663 38203441 ~ 38204163 (-)
G1979813 NA other downstream 1049944 37337746 ~ 37338882 (-)
G1979607 NA other downstream 1423107 36965174 ~ 36965719 (-)
LOC110504237 LOC106611328 other downstream 2041771 36325431 ~ 36370245 (-)
G1979142 NA other downstream 2172596 36211946 ~ 36216230 (-)
G1981678 NA other upstream 595813 39036287 ~ 39038944 (-)
G1981964 NA other upstream 1116146 39556620 ~ 39569809 (-)
G1982029 NA other upstream 1179391 39619865 ~ 39620209 (-)
G1982657 emilin1 other upstream 1411709 39852183 ~ 39858120 (-)
G1982679 NA other upstream 1444612 39885086 ~ 39905809 (-)

Expression


Co-expression Network