LOC110505902 (LOC106611388)


Basic Information

Item Value
gene id LOC110505902
gene name LOC106611388
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 39543907 ~ 39557667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470902.2
AGACCAATGAGGAAGTTTTTACCTTGCTTCTTTGTTTAGTGTCTTCAAGTGcatattttttatatttcagAAACCTTTAGCTAGCGTACAAATAACGAGCGTCATCTAGTCTGCAACTCAACTTCATGCACTTTTATGATTTTGTTTTGATTGAGTTAATTTAGTGTACATAATTTCTCATAAATACTAACGGTAGCTAGTTAGCAAATACAGTCAGGAGCATTTATTGATGTCAATCTCTGAAGGTTTGCTCAAATCACAATGGATGGTGAGAACAAACCCTGCCTGCCACTCTCCTTTACCGTACCTAAATCTGAGGGTCCTGATTGTAACAGTAAAGTCCAGAGTGAAcaacaggctccagagatggcatcagtgaagcaggaagactgcagtcaaacactggggctgaatgtcaacattaaagatgaagtAAAGGAGGAAGAGATTGAAACATTTGTGTATCATGGGCCGGCTGGAGGGTTCAAAGAAGAGACGGAAGAACACAAAGTCTTACTACTCAAAGGAGAAGGACCTGACTACGCTGAACTTAAGGTTGAAGTTGAAACGTCCAGAGCGCAACACCGTGTAGAAAGCAAAGCTAAGGAGTCTAACCACTGCCCACACTGTGAGAAAAGTTTCCCATTCCCATCATATCTTGAAAGACACCTGCGGAAAcatactggagagaagccttattcctGTTCTGTCTGTGGGAAGTGCTTCAGGACGTCAACTCATTTAACCACTCACCGGGGAGTTCACACAGGGGAGAgaccttactcctgctctgactgtggaaagtgTTTCTCTCTTGTAAGTAACTTTAAACAACATCAGCGAACGCattctggagagaagccttactcctgctccgATTGTGGAGACAGTTTTTCTCAACATGGTAACATGCGTCGTCACCAGAAAAGAcatactggagagaaaccttactccTGCTCCgattgtgggaagagtttcattACAACATCTGAATTAATCAGTCACCAGAGagtgcacacaggagagaaacctttccactgttctgtctgtggGCAGAATTACTTTAGCCTGAGTAACTTAATACgccaccagagaatacacacctAGGACAGAAGCCATATTCCTGCTTGACTGTGTGACGTGCTTCAAAACATAATCTGAACAAGAGGTCTTCACGAATCCACCCGTACCCGGAATACCCGAGAACCGATCCGATCCGGGACATGAGCAGATCTGGATCCAGAATTCTGAATAATGTTACAGGTCTGGTTCGGATCTGATTTGATTGGGTCTCGGGTATGTGTAATTTAACTGACTTGTCCGGAGGGGCCCGTACAGATCCGAACTCAActacacagaaacagagagagagagagagagagagaattatgaTGATGCAGGAAGCTCCTCTCTCACACTGTCGAAGACATGGAGCGGTACCTACACAGTCCCAACATTGACCCTGTCTGCCGAGGATGGCGTAGAGAGTTCCTGCTCTATAGCTGTTATTGACCGCTACGCACAGAGGACGAGGAGCCCAACCAGCATGGATCAGGGGCAGGAGGAATGGCCTAACAGGGAGCTCCAGCGTGTAGCAGGGACATGAGGGAATGACCCAGCCTGACGGAGTGGAGAGAGCAGCAGTAAACTACAAGGGAAAGGTTTTTAATTTCTCCTGAGACTGATAGTTCCTACTCAGAGCAATAGAGCAGGAACTCTCTGAGCCATTACTGATCCTGTATATTCAATACAaggccaaaagtatatggacatctgctcgtcgaacatctcattccaaactcATGGGTGTTAAACCCATTTAATCCCACATTTTCCCAGACATGAAAATATCAAAATCATTAGTGACCCTTTGGAAtaatattttttctttttttaatgttCATGGAGGTGAGATAATGGTGAGATAATGGTGAGATAATGTGATGTATACTGAATTAACATTTATCCTATGCAGTCATCAACATTCTTATATATCCCAGCCCACTTATGAATCGATTACATCCATGCCAGCCATAGTATCGGATCATGCTCTCATCCACTCCTGATGACTATGACTGATTGAGCTCAGAGAAGACGGGCCTAATCTTACAAAGTGTGTCGTCAGTGATCTTTGCACACAAAGATCACTGACGACACACTTTGTAAGATTAGGCCCGTCTTCTCTCAACGACATGAACTGAGGCCATTGTTTAATCAAAGCGATTTCTCCGCATTGCATCTGAAGTGCTTTCATTACTGTACATCACTGTCAAGTGACCAAACCTTTTGTTTGGGAGCTTTGACGCAACCATCTTCTCTTCTCATGGTGCAACCAGGAAGTAAACAGCTCATGTGACAATTTACACTAATGCATTGAAATGCTAGAAATATCATTCAGTAACATCTTTAGAGCCTAATAACGTTTTTTCACTGAGccattcagtaaggccattcttttgccaatgtttgtcaatggagattgcaGATTTTTctttacacctgtcagcaaccggtgtggctgaaataaacaaatccactaatttgaagggcatccacatacttttgatcatgtagtgtagctTACATTGCTtgtctgttttttgttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgtgttaactgcctggtaaggggcagaacgacagattgtcaccttgtcagcttaggggtttgaacttgcaaccttccggttactaggccaacgctctaaccactaggctaccctgccgccccatgtttTGATTTTGAGTACTGCGCTGTTGGGAAGGGCTTGCAAGTTCatgttaagcatttcactgtacttgtgcatgtgacaaataaaacctgAAAAATCAGAAATGCACGATATCTTTCTGTAGTAAAATAAAATTTGAAATCTTA
>XM_036962530.1
AGACCAATGAGGAAGTTTTTACCTTGCTTCTTTGTTTAGTGTCTTCAAGTGcatattttttatatttcagAAACCTTTAGCTAGCGTACAAATAACGAGCGTCATCTAGTCTGCAACTCAACTTCATGCACTTTTATGATTTTGTTTTGATTGAGTTAATTTAGTGTACATAATTTCTCATAAATACTAACGGTAGCTAGTTAGCAAATACAGTCAGGAGCATTTATTGATGTCAATCTCTGAAGGTTTGCTCAAATCACAATGGATGGTGAGAACAAACCCTGCCTGCCACTCTCCTTTACCGTACCTAAATCTGAGGGTCCTGATTGTAACAGTAAAGTCCAGAGTGAAcaacaggctccagagatggcatcagtgaagcaggaagactgcagtcaaacactggggctgaatgtcaacattaaagatgaagtAAAGGAGGAAGAGATTGAAACATTTGTGTATCATGGGCCGGCTGGAGGGTTCAAAGAAGAGACGGAAGAACACAAAGTCTTACTACTCAAAGGTCTCTCTCAGGGAGAAATCTCCAGCTCTGGTCCCCCACCAACACCAGAGGGAACTGTGGAGTCAGCTTTACCCCCATGGAGGAGCTACCCTCCACCTCACCATCAACACCTTGGCCAGCACCAACAGTGCCACCCCAACCCATCACCTCCTGTCCTGCACCATCTCACTCCATCCACTCTGGCTCTGCTCTCCAACCCATCACCTCCTGTCCTGCTCCATCTCACTCCATCCACTCTGGCTCTGCTCTCCAACCCATCACGTCCTGTCCTGCACCATCTCACTCCATCCACTCTGGCTCTGCTCTCCAACCCATCACGTCTGGCTGGACACCACAGGGCTCCCAAGTCAATCTGCTCCAACAAATCCTGGACACACAGGATTTGTGCCTCAGCCACCCTTCCTCTGGGAACACCATCAGCCTCCATGTCCAGTCCCCTCACATTAATATCACCTACTGCACCACACTTTGATTCCCCATTCCCATTACCGGTAATCACAACCCATTCCCCCCAGCCATCACAAACCAGCCCTGCCCCAACCTCCCCTACCTTAACCAGCCCTGCCCCAACCTCCCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCCCCTACCTTAACCAGCCCTGCCCCAACCTCCCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCTCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCCCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTTCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCTCCTACCTTAACCAGCCCTGCCCCAACCTCTGCTACCTTAACCAGCCCTGCCCCAACCTCTGCTACCTTAACCAGCCCTGCccactctctcatccctccaatcTCCAGATCTGTTAAACGGCGAGTTCAGGAGACAGTCCGGCCTTGTCCTACACCCACTGCTAAGAATCAAAAACATCAACAAACATCAAGAAACAAATGCAAATAAAATACAACAAGTGTTTAACTTGCTTTCTTACAGCCTCTTCACActtactacactatacatattgCTCACATGTAGTCTTGTGTACTTGCcacggagaggagggagtggaaggatgATGGGTGCTCCGGAATGTTTCGTTTTCTTCCAGTTCCGCACAACTGTTCTGTTAGCAACCCTGTTCTgttgctcttcaaccgatcgctctccgcacctgcctgcctgtctagcatcactactctggacggttctgacttagaatatgtggacga
>TU2265022
TCAGGAGCATTTATTGATGTCAATCTCTGAAGGTTTGCTCAAATCACAATGGATGGTGAGAACAAACCCTGCCTGCCACTCTCCTTTACCGTACCTAAATCTGAGGGTCCTGATTGTAACAGTAAAGTCCAGAGTGAAcaacaggctccagagatggcatcagtgaagcaggaagactgcagtcaaacactggggctgaatgtcaacattaaagatgaagtAAAGGAGGAAGAGATTGAAACATTTGTGTATCATGGGCCGGCTGGAGGGTTCAAAGAAGAGACGGAAGAACACAAAGTCTTACTACTCAAAGGAGAAGGACCTGACTACGCTGAACTTAAGGTTGAAGTTGAAACGTCCAGAGCGCAACACCGTGTAGAAAGCAAAGCTAAGGAGTCTAACCACTGCCCACACTGTGAGAAAAGTTTCCCATTCCCATCATATCTTGAAAGACACCTGCGGAAAcatactggagagaagccttattcctGTTCTGTCTGTGGGAAGTGCTTCAGGACGT
>TU2265024
gagagaattatgaTGATGCAGGAAGCTCCTCTCTCACACTGTCGAAGACATGGAGCGGTACCTACACAGTCCCAACATTGACCCTGTCTGCCGAGGATGGCGTAGAGAGTTCCTGCTCTATAGCTGTTATTGACCGCTACGCACAGAGGACGAGGAGCCCAACCAGCATGGATCAGGGGCAGGAGGAATGGCCTAACAGGGAGCTCCAGCGTGTAGCAGGGACATGAGGGAATGACCCAGCCTGACGGAGTGGAGAGAGCAGCAGTAAACTACAAGGGAAAGGTTTTTAATTTCTCCTGAGACTGATAGTTCCTACTCAGAGCAATAGAGCAGGAACTCTCTGAGCCATTACTGATCCTGTATATTCAATACAaggccaaaagtatatggacatctgctcgtcgaacatctcattccaaactcATGGGTGTTAAACCCATTTAATCCCACATTTTCCCAGACATGAAAATATCAAAATCATTAGTGACCCTTTGGAAtaatattttttctttttttaatgttCATGGAGGTGAGATAATGGTGAGATAATGGTGAGATAATGTGATGTATACTGAATTAACATTTATCCTATGCAGTCATCAACATTCTTATATATCCCAGCCCACTTATGAATCGATTACATCCATGCCAGCCATAGTATCGGATCATGCTCTCATCCACTCCTGATGACTATGACTGATTGAGCTC
>TU2265025
CTGAGGCCATTGTTTAATCAAAGCGATTTCTCCGCATTGCATCTGAAGTGCTTTCATTACTGTACATCACTGTCAAGTGACCAAACCTTTTGTTTGGGAGCTTTGACGCAACCATCTTCTCTTCTCATGGTGCAACCAGGAAGTAAACAGCTCATGTGACAATTTACACTAATGCATTGAAATGCTAGAAATATCATTCAGTAACATCTTTAGAGCCTAATAACGTTTTTTCACTGAGccattcagtaaggccattcttttgccaatgtttgtcaatggagattgcaGATTTTTctttacacctgtcagcaaccggtgtggctgaaataaacaaatccactaatttgaagggcatccacatacttttgatcatgtagtgtagctTACATTGCTtgtctgttttttgttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgtgttaactgcctggtaaggggcagaacgacagattgtcaccttgtcagcttaggggtttgaacttgcaaccttccggttactaggccaacgctctaaccactaggctaccctgccgccccatgtttTGATTTTGAGTACTGCGCTGTTGGGAAGGGCTTGCAAGTTCatgttaagcatttcactgtacttgtgcatgtgacaaataaaacctgAAAAATCAGAAATGCAC
>TU2265026
attcttttgccaatgtttgtcaatggagattgcaGATTTTTctttacacctgtcagcaaccggtgtggctgaaataaacaaatccactaatttgaagggcatccacatacttttgatcatgtagtgtagctTACATTGCTtgtctgttttttgttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgtgttaactgcctggtaaggggcagaacgacagattgtcaccttgtcagcttaggggtttgaacttgcaaccttccggttactaggccaacgctctaaccactaggctaccctgccgccccatgtttTGATTTTGAGTACTGCGCTGTTGGGAAGGGCTTGCAAGTTCatgttaagcatttcactgtacttgtgcatgtgacaaataaaacctgAAAAATCAGAAATGCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470902.2 False 2947 mRNA 0.43 4 39543907 39555706
XM_036962530.1 False 1958 mRNA 0.51 4 39543907 39557667
TU2265022 False 520 TUCP 0.46 4 39544120 39553492
TU2265024 False 708 lncRNA 0.44 1 39554139 39554846
TU2265025 False 713 lncRNA 0.41 1 39554957 39555669
TU2265026 True 460 lncRNA 0.41 1 39555210 39555669

Neighbor

gene id symbol gene type direction distance location
LOC110504251 LOC106611379 coding upstream 44181 39464867 ~ 39499726 (+)
alkbh1 alkbh1 coding upstream 107261 39427675 ~ 39436646 (+)
LOC118944191 LOC106611372 coding upstream 119139 39418935 ~ 39424922 (+)
LOC110505893 dio2 coding upstream 969532 38565810 ~ 38575881 (+)
LOC110504247 LOC106611366 coding upstream 1216671 38193711 ~ 38327236 (+)
LOC118944212 LOC106611387 coding downstream 1104 39558771 ~ 39569722 (+)
LOC118944330 LOC106611386 coding downstream 20545 39578212 ~ 39583837 (+)
LOC110505903 LOC106611385 coding downstream 33403 39591070 ~ 39602241 (+)
LOC110505904 LOC106611378 coding downstream 219855 39777522 ~ 39858031 (+)
LOC110505907 LOC106611384 coding downstream 331979 39889646 ~ 39966453 (+)
G1981326 NA non-coding upstream 13596 39522450 ~ 39530311 (+)
G1981319 NA non-coding upstream 37121 39503830 ~ 39506786 (+)
G1981200 NA non-coding upstream 240760 39301645 ~ 39303147 (+)
G1981182 NA non-coding upstream 256897 39269940 ~ 39287010 (+)
G1981980 NA non-coding downstream 19910 39577577 ~ 39577833 (+)
G1981992 NA non-coding downstream 36602 39594269 ~ 39594487 (+)
G1982006 NA non-coding downstream 45346 39603013 ~ 39603246 (+)
G1982007 NA non-coding downstream 46142 39603809 ~ 39604173 (+)
G1982036 NA non-coding downstream 70660 39628327 ~ 39628553 (+)
G1981068 NA other upstream 449093 39036366 ~ 39094814 (+)
G1980792 NA other upstream 1014802 38528607 ~ 38529105 (+)
G1980026 NA other upstream 1814003 37721134 ~ 37729904 (+)
hivep2b LOC106611354 other upstream 2233456 37264780 ~ 37311200 (+)
G1982355 NA other downstream 831991 40389658 ~ 40390407 (+)
G1983277 NA other downstream 1489884 41047551 ~ 41047902 (+)
G1983387 NA other downstream 1657808 41215475 ~ 41216752 (+)
LOC110504259 LOC106603281 other downstream 1740039 41297432 ~ 41350749 (+)
G1983499 NA other downstream 1890735 41448402 ~ 41449340 (+)
LOC110505902 LOC106611388 other upstream 647 39543907 ~ 39557667 (+)

Expression


Co-expression Network