LOC110505909 (cd93)


Basic Information

Item Value
gene id LOC110505909
gene name cd93
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 39987835 ~ 39990813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585382.2
ACAAAAATATGCTGCAATATTTTTTTTAGGTCtaatgtttacatacacatacaggGTGTAGGCGCTTGAATGTACAATTCAAATTCGCACCACTTGCAGGGAATAAGGAGCCTAATTTGTCGTCCGTTTGCCAATAAGGCGTAAATGTAGCCTTTTAGAAATTAAATCAATGATTGCTGTTGGTTTATTGGATTATGTGGGAATGATGCTGTTGTTACTTTTACTGCAACTCTCTATGTGGGGAGCAACTGGAGCAGACACCGACGGAGAAGCAACTGTGTGTACATCCAATGCCTGTTTCTCTTTTCACATGGAGGGAGTCAGCTTTGAAGACGCTCGATTGAAATGCCATGGTGACGGAGGTTACTTGGTAACAACTAAAGACAAAAGCGAGATAGCAGAACTTCAGTCAACCCTTTCACAGATCGACGAAAGACATCGCTATTTGGACTTCAAATTTTGGATCGGTTTGAAATTGCGTAAAGGCGATTGCATTATAAGGGACATGAGTCTCAACGGTTTTAAGTGGATATCTGGAGGGGAATATTCCCAATATTCGAACTGGGAGAAGGAACCTCGCAGCACCTGCACAGAGGAGCGTTGCGTGTTGGTACATTATTCTTTATGGAGTCGCAATGAATTGAAATGGACGGATGGATCTTGCAAAGACGAGGCTTTTTACTCGTGCAAATTCTATTTCAAGGGAATGTGTAAACCTTTGTTGTTGGCAGGAGGAGAGCAAGTGAATTACATGCTCCCATTCTCAGCAAATCCATTAAATGGGGATAATAACATGACTGCATTCCCATTTGGAACATATGCTGATATAAGATGCAATGACAATGATCACTTTTCTATTTGTAAATTAACGGATGGTGTCTATGGTTGGACTATCCCTGGTCCGTTTTGTGGCTCAGATAAACAGAACTGTGGGTATAAAAACGGTGGATGTGATCATTTGTGCGTTGATAGTGACGCTGGTGGTGTCCGTTGTGAATGCAAGGACGGTTATGTGTTAGGACAGGACAGAGTATCATGTGGCCTAAAGGAATATTGTCACAGTTCTCCATGTCAGCACCAATGTGTAACAGGACCGACGGGCTTCTCGTGCGTATGCCCAAACGGCTTCCAATTGGATAAAGACCAATTTGGTTGTATTGATGTTGATGAATGCCACATTAATGCCTGCGATGGTCATCATTGCATCAATACCCAAGGTAGTTACATATGTAGGTGCAAGGGAGGCTACACAATGGTTGATGGCAAATGCCACGATATAGACGAGTGCACGGAATCTAGATGTCCCCAAATATGTCTTAACTCTGAAGGATCCTTCTCCTGCCATTGCATCGCGGGGTTCACTGTGTCTGAGGACGGTCATACTTGTAAAGACATAGACGAATGCTTCAGTAATCGATGCGAGGACAAATGCACTAATACCTTTGGTAGTTTCAGGTGTTCTTGCCATCAGAACTTCCGGTTACACCCTAATGGAATGACCTGCATTCGAGATGTGACTGTTGTCTCCACTGCGGAGACGTCAAGTGATCATAGAGACACTGACCAACACGACGAGACCATGGGCACTATAACCATATCGCCGGTTGAATTAAAAAAAGAGACTCAGTACACCCACGGACCACCTCAAGACACTATTAGGCACGACATTACGCACGACATTACGCATGACATTCCGCACGACATTACGCAGCATAGTCCGTCCAGCAAAACCATTGGAATGAGTGGGCCAGCGCATAATTATCATTTATTTAGCTCTTGGCTGTTTATTTGCGTCATTGCTTCTGTTGTTCCACTACTTATTCTCATTGCAGTAACCTCTGTTATTGTCATATTTCGATGCAGTCATTCAAAAAAAGAAGCGAGGAAGAAAATCGCCACTGCTGACAGTTATTGTTGGGTGGCTTCCGGTATAGATACTCGGTTGGAAACATTTGACGGGTCACTTGAAAGCACAGCTTGAAATTGTGTGAACTCTTGAAATGTTAAACGATAACAAATCTAAATAATATTCAGACATTGCATTACctactaaaTGTTTTCTTTTTACAGCGTGTCAGATCATTGCCTGTACTTCATCAAAGCACATATCCAATTTTAAGTATGTTTTATTCATAACGGTTTAACAATGTTATTTCATCGTCATACTCTCGAAAAAAAATGTTGGgttgatttttactattttcccgAGTTCATGTTATTCGTGTATTTTGACCCAGCAGTGGGTTATTTCCTACTTTTATTGCACGGTAatcattatttatattttttgctaTACTCCTTCCTATACAGTCCATTGCTGTGTGCACGTCGTTAGTCCAGTCACGTTGTGCGTGGTTTACAGACctcagtcagggtctcaactCACTGTTGAGTTGGAATAGTAGAAAACACAGGGTGCAATTTCGAaacttggttgtgcatcagcagttttcctctcGTTATAGCCCATGGCATTCACCCAcggtcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgacATTCACCCAcggtcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgtcagttaTCATTTTTTAGACCGATAATTTATTtgagttagtctagccagctatctaaacttgtaataATCAGATCTGAATTACCAATTACCAGGGACCCTGACCTCGAGGcggccccattgattttgttactctctctgtgtagaattgcaggaaatcgCCTTTTAAACCTGCAAACATGTCTCCCCGCTCCATGGTGAAATGtgttgaattgcaggaaattatctgtaaaactgcaacaacaacaaaaagttctGTACCACAAACACATTTGTTTACCTTttctaaataaaatatatttttttctgctaA
>TU2266689
tcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgacATTCACCCAcggtcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgtcattCACCCAcggtcactcaattagcccatgtcagttaTCATTTTTTAGACCGATAATTTATTtgagttagtctagccagctatctaaacttgtaataATCAGATCTGAATTACCAATTACCAGGGACCCTGACCTCGAGGcggccccattgattttgttactctctctgtgtagaattgcaggaaatcgCCTTTTAAACCTGCAAACATGTCTCCCCGCTCCATGGTGAAATGtgttgaattgcaggaaattatctgtaaaactgcaacaacaacaaaaagttctGTACCAC

Function

symbol description
cd93 Acts upstream of or within angiogenesis. Is expressed in endothelial cell.

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585382.2 False 2942 mRNA 0.42 2 39987835 39990813
TU2266689 True 408 lncRNA 0.43 1 39987884 39988291

Neighbor

gene id symbol gene type direction distance location
LOC110505906 LOC106603387 coding downstream 7782 39967887 ~ 39980053 (-)
LOC110505899 LOC106611374 coding downstream 560234 39424465 ~ 39427601 (-)
LOC110505895 nrxn3 coding downstream 739652 38629768 ~ 39248183 (-)
LOC118944132 NA coding downstream 1486526 38467126 ~ 38523197 (-)
LOC118944133 NA coding downstream 1488322 38497981 ~ 38499513 (-)
LOC118944315 NA coding upstream 146613 40137426 ~ 40140566 (-)
tpo tpo coding upstream 157131 40147944 ~ 40173204 (-)
LOC110505924 LOC106606698 coding upstream 186042 40176855 ~ 40236490 (-)
LOC110505928 LOC106611397 coding upstream 336612 40327425 ~ 40335285 (-)
LOC110504256 LOC106611412 coding upstream 375016 40365829 ~ 40387233 (-)
G1982726 NA non-coding downstream 637 39986687 ~ 39987198 (-)
G1982654 NA non-coding downstream 75768 39844209 ~ 39912067 (-)
G1982689 NA non-coding downstream 77416 39906903 ~ 39910419 (-)
G1982657 emilin1 non-coding downstream 129715 39852183 ~ 39858120 (-)
G1982578 NA non-coding downstream 305967 39678392 ~ 39681868 (-)
G1982734 NA non-coding upstream 13417 40004230 ~ 40004438 (-)
G1982739 NA non-coding upstream 19838 40010651 ~ 40010875 (-)
G1982741 NA non-coding upstream 20457 40011270 ~ 40013411 (-)
G1982766 NA non-coding upstream 54317 40045130 ~ 40045757 (-)
G1982770 NA non-coding upstream 56411 40047224 ~ 40059237 (-)
G1982679 NA other downstream 82026 39885086 ~ 39905809 (-)
G1982029 NA other downstream 367626 39619865 ~ 39620209 (-)
G1981964 NA other downstream 418026 39556620 ~ 39569809 (-)
G1981678 NA other downstream 948891 39036287 ~ 39038944 (-)
G1982769 NA other upstream 57213 40048026 ~ 40063881 (-)
G1983003 NA other upstream 566485 40557298 ~ 40558989 (-)
LOC110504262 ect2l other upstream 950094 40917719 ~ 40944573 (-)
G1983374 NA other upstream 1199155 41189968 ~ 41197087 (-)
G1983984 NA other upstream 1746762 41737575 ~ 41739066 (-)

Expression


Co-expression Network