LOC118944315


Basic Information

Item Value
gene id LOC118944315
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40137426 ~ 40140566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039550.1
tgccacacggtactgtttcggtttcacgtttattgttttggagtgttcagtttatgtctttaaataaacgttatggacacttaccacgctgcgcattggtcctccgatcctccTCGGAAGAGGAGGAATGCCGCTACAAGCAGGAAATGTGCAATGTGGCTGACTAGCTTATAATCAACCTGGGTCCATAATCCAACTACACAACCTATTCTGATCTCAAAGACTTTTTAAACATCTCAGAGGTGGCAGTTCTAGAGCTGATACTGGACCCCACGAACCTGTCAAATGCAACTCTTGCAAATGTATTTCCTATGGGTTCTTGGGTCTTCAGATCTATGGGTGATTGGTCCATTTTTCCAATCATTAGCGGAGGTTTCTGCAAAGAGAAGCCGGACGGCTATTGAGCCAGGACTGAGACACCCTCTAAAACCTGACACTGACGACACTAGTCCCAAAATTTCAGACACTAGAGAGTAGTGTTCCAGGTGTCTCTCCCGTCATTCCTCCCAAGCATTTCATCTCAGTCATCCCAAGGAATATCAGCTGTGACTCCACTGATTTTCATTGCAATTTTTACAACCCCAGAGATTTGAATCTTGCAATGGGGAATGTAGGATGTTGTGGACTAATCTAAATTTGACCCAGCTGATTGCAAAGCCTACTCATCCAAACTTAAAGGACCCTACAACATTAACGTCGATTGCCCTCATATTTACAAATACTCTCGAGTAATATGCTAGGAGTGGAGTGTTTGCTTTGGATATTAGTGACCGGTGACCATTGTCCCAAATCAGATTATTATCTGAATGTACAGGGTGCTACATTTTGGAAAGCTGTTACATCAATGAAGAgttgtctcctcttctcttcccccaaTAGATTCATTTAGATTCTGGCCAATACTGACAATTGATATCAGTCATGCATTAAATCACAATTTTATCTTTGCGGGCTACATATTTGAACGCATTTCAAAGACAGCTCTTAAAAAAAGAGTAGTTTGGATGTTGATGTTGAAAATCTATTGAATGATACTAGAAATGCTGGTCAGGAGTTTTATTTTTGGAAATTCACTGACAAAGTAGTCCTGGATGTTTTGCTAACATTACACCAAAACAAATCCACAGGGGCTGATCATTTGGATCCCGGCCTAAGTGTGTAGCTCAGTAGCTCACATTTTTAATTTAACATTGTTTTCAAGAAGTATTCCAAAAACATGGAAATCCGGATATGTGCCACCCTCTAAGGGTGGGCATACAAATGATCttgacaactatcgccccattTTAATACTACCTTGTTCACAGTAGCTAAGATTCTTGAAATCTTGGTTAAGGTGCAACTTTGTTTCTTTTTACCTGATAACTGTATTTTCAATAtaaaccaatcagggtttaggcctgggcgTAGTACTACGACAGCAATCACGCTAGTTGTTAATGATCTTGTCAATGCCTTGGATGCTAAAAAGAACTGTGCTGCCATGTTCATTGACCTGTCAAAGGGTTGATCATTCTGTTATCAAGAATAGGCCTGGGATATACAGCCTGCTTTTTGATTTCAGAATTATCTTAGCAACATAACTCAGGCCATCTTGACAGATGGGGTTGAATCGGAATTTCTTGATATTCAAAAAGGTGTTCTTCAGGGTTCTATTTTGGGTCCATTATTGTTCACCTTGTATATTAATGACATAGGAAACACTGTTGTAACATTCATATATATGCAGATGACAGTTTAGTATTCCTGTGCCAACCCAGTGCAGCAGGCTATTTGTGAACTTCATCATGAAATCACTTACAGATCTTAAATTAgtgttaaatacaagtaaaaccaaGCTCATGCTGTTATCTAGGTCACAAAATGTTGACTCTGAGGACCTGTTCATGTGCGCTAATAATGGAGCCCAAATTGAGCTTGTTTCTCAATATAAGTACCTGGGTGTCTGGATTGATGCATATAGAGAATCTGACTAATAAGCTAAGatcttttttttaatttattatatcaaaataaattatataaataaataaattatgccTCAGTATTGAAAATAGGAGAAAGATTGTTCAAACAACGCTTCTCCCTGTATTGGATTTTGGTGACATTGTTTACATACATGTGGCACAACAtctgttttaaaaataaaatttgatttgatttgaaaccctTGGGCACAGTACACCATTCTGCAATACGTTTTATCACAGGGGGCAATTTTAGGACAAATCTTTGTCTGTGTAAAAATTTCAGGATGGACCTCTGTAAGAAGAGCTGCACTCTCTCATTTATTTACAAAGCAATCTTACAGAAACTCCCTTCATATGTAACCTCCTTAATTAAGTTAAGAATCATAAGTTACCAAACCCGTCCTCGGGAATGGGCAACACTAGAGATACCTTCAGTCTCCACAGATTTGGGAAAATCTgagttattttcttttttttgcccCTAATTTGTGGAACAATCTGCAGAGTTCACTGCAGCTAGTTGTGCTGGTGCCAGTTTACATTATTGATTTGAGAACCTCTATGTAGTTGAATATGATTGGTtttattaaatatgtttattttgtttGCTGAATTCTATTGTTTTATACAAATACATGTGTGTATTTATTATTCTGTAAAATCTTGTAAATCTTGTAAAATTGATTTTTAATCTCAATGTGACTCCCTgctaaaataaaaatagtgcaaTGTGAGTTTCAGCTCTGTTTAAAGGGACTAATGATTATTGAATATGATttggcatatacagttgaagtcaaaagttgaACTACAcccaggttggagt

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039550.1 True 2796 mRNA 0.38 3 40137426 40140566

Neighbor

gene id symbol gene type direction distance location
LOC110505909 cd93 coding downstream 146613 39987835 ~ 39990813 (-)
LOC110505906 LOC106603387 coding downstream 157373 39967887 ~ 39980053 (-)
LOC110505899 LOC106611374 coding downstream 709825 39424465 ~ 39427601 (-)
LOC110505895 nrxn3 coding downstream 889243 38629768 ~ 39248183 (-)
LOC118944132 NA coding downstream 1636117 38467126 ~ 38523197 (-)
tpo tpo coding upstream 7378 40147944 ~ 40173204 (-)
LOC110505924 LOC106606698 coding upstream 36289 40176855 ~ 40236490 (-)
LOC110505928 LOC106611397 coding upstream 186859 40327425 ~ 40335285 (-)
LOC110504256 LOC106611412 coding upstream 225263 40365829 ~ 40387233 (-)
LOC118944271 NA coding upstream 333300 40473866 ~ 40496727 (-)
G1982815 NA non-coding downstream 15634 40121544 ~ 40121792 (-)
G1982814 NA non-coding downstream 16270 40120942 ~ 40121156 (-)
G1982809 NA non-coding downstream 38818 40095902 ~ 40098608 (-)
G1982802 NA non-coding downstream 55714 40081388 ~ 40081712 (-)
G1982770 NA non-coding downstream 78189 40047224 ~ 40059237 (-)
G1982838 NA non-coding upstream 9090 40149656 ~ 40153053 (-)
G1982841 NA non-coding upstream 16906 40157472 ~ 40158122 (-)
G1982858 NA non-coding upstream 45107 40185673 ~ 40187339 (-)
G1982865 NA non-coding upstream 55220 40195786 ~ 40197573 (-)
G1982769 NA other downstream 73545 40048026 ~ 40063881 (-)
G1982679 NA other downstream 231617 39885086 ~ 39905809 (-)
G1982657 emilin1 other downstream 279306 39852183 ~ 39858120 (-)
G1982029 NA other downstream 517217 39619865 ~ 39620209 (-)
G1981964 NA other downstream 567617 39556620 ~ 39569809 (-)
G1983003 NA other upstream 416732 40557298 ~ 40558989 (-)
LOC110504262 ect2l other upstream 800341 40917719 ~ 40944573 (-)
G1983374 NA other upstream 1049402 41189968 ~ 41197087 (-)
G1983984 NA other upstream 1597009 41737575 ~ 41739066 (-)
G1984232 NA other upstream 2127373 42267939 ~ 42270359 (-)

Expression


Co-expression Network