tpo (tpo)


Basic Information

Item Value
gene id tpo
gene name tpo
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40147944 ~ 40173204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963018.1
TCCCCAATGCAGCTGTTTACATTTCTCCGGCAAGCAGAGCCTGAGACCCAAGAGATTTCCAGAGCTGCAGAGGTGTTTGACACAACTTTATATATTCTAAAGGACAGAGCCAGCCGGAGACATAAAAGGGCTCTTGTTGCATCAGAGCTCCTTTCATTGGAGGACTTGGCGCTGATTGCAGACCTGTCAGGTTGTCCTCCACCCGTTCTCCCAGCCTTCTGTCACAACGATTGCCTCGCCAACAAGTACCGTTCCATATCTGGAGTCTGCAATAATAGGCAGAAGCCTTTCTGGGGCACAGCCAACAGCGCCTTGGCCAGATGGCTTCCGGCAGAATATGAAGACGGAGAAAGACAACCAAAGGGCTGGAACCATGGGCAACTATATAATGGCTTCCAACTTCCCCCGgTACATGAAGTCAGCAAGAAGATACTGCAGAGCTCCAGCAGACCGATGTTGCTAGATGCTGCTTATTGTCAGATGCTAGTGGACTGGGGCCAGTACATCGACCATGACATATCCTTCACTCCTCAAAGCACAAGCAGAGCTGCTTTCTTGGGAGGACTGGACTGTTTAAAGACGTGTGAAAACATAAACCCCTGTTTCCCTATTGAGACATTCCCTGATGACAAACTGTCTGGGAACAGAAGCTGTGTGCCATTCTTTCGTTCATCGCCAGCCTGCTTCTCCGGTAATGCACAGGCTGCGACGACGGACATCAAACAAGTGCTACAGCGTCAACAAATGAACTCAATCACGTCTTTCCTGGATGCATCCACTGTATATGGCCACACCCCATATTTACAGAGTGCCCTTCGAGACCTCTCAAACTCTGAGGGTCGGCTGGCTGTCAACAGCAGATTCACTGACCATAGTGGCAGACCCTACCTGCCCTTTGTCCCCAACACCCCGTCTCCATGCTTCCAAGATCCAGGGGATCTGCAGGGGGAAAGGGTGGATTGTTTTCTGGCTGGGGACAGCAGGGTGAATGAGGTTCTGACCCTGGCGGCTCTACACACTTTGTGGATGAGGGAACACAATAGAATCGCAGAGGCCTTGAATAGCCTCAACCCACACTGGAGCTCAGAGATTATTTACCAAGAGGCCCGTAAGATCATCGGAGCTCTGCACCAGATTATAACCACCAGGGATTATGTTCCCAAAATTATTGGAAGAGAGGCTTTTGATCTTTACATTGGTCCCTATGGGGGCTATGATGCAACTACAGAGCCCTCAGCCTCCAATGTATTCTCGACTGCTGCATTCCGATTCGGCCATGCCACTATTCCCTCAGTTCTCCGGAGACTCAACCAGAGCTTCCAGGAGCATGAACACTTCTCCTCTTTGAGTCTGCATAAGACTTTCTTCAGTCCCTGGCGACTCATCAAAGAGGGTGGACTAGAGCCAGTCCTCCGAGGCCTGTTGGGGACGCCGGCGACTGTAGTGAGCCCAGAAAACCTACTGACTGAGGAGCTGACAGAGAGACTGGTTGTGCTTACTGTCCCAGGGGGCTTGGACTTGGCCGCACTCAACCTGCAGAGGGGACGTGATCATGGACttccagGTTACAATGACTGGAGGACGTTCTGTGGACTGGACAGAATAGAGACTCGAGACGACTTCAGAGAAGTtgtaaaagatgcaagtgttgtTGGGAAGATCATGGACTTGTTTCGACATCCTGACAACATTGACGTGTGGCTAGGAGGACTGGTAGAGGAACCTCTGTCTGGCTCCAGGACTGGTCCACTCTTTTCATGTCTCATTGGAAAGCAGATAAAGATGATTCGAGATGGGGACAGGTTCTGGTGGGAGAGTGAGGGTGTGTTTACACTGGGTCAGAGGGTGGAACTACTAAGGCATTCTCTATCTCGCGTGATCTGTGACAACAGTGAAGTGAAAGAGGCCCCACTTGACCCCTTCAGGTTTGGGAAATACCCTGACGGTTTTCTCTTGTGTGACAATATACCATCAATGAACTTGGAGGCCTGGAGAGAGGAGCCTAGCCCAGACACCTACAGCTAAGACGAGAAGCAAGACATCCTCCATGAAAACATTGGCCTGTGTTTTATTTTGCTCTATGTTTTCATGCTTTTTATCCTGTATATTTTAACTACTGTTTCCCCTGCAACGCCTTTTTATCTTTGTGAATATCATTGTACTTCAGTGCAACGTATTTGGGATGAATAAAGTTATAAGAGGTAAACAAAGTCAGTGTATGCTTATTAAAAAAGACACAGCCATAATTACTGTCAatcatgtttcctctctctatgtcATTTCTGTTcttggtaggggagagtggggtaaatgGGGCCgtccttgtttctaggaaaccatacaccaCATGAATCATTTGACCTACTATTTAGGAAGACGTAATAATTgaatggagtctgtgaaggaagaaagcACATGGAAAAACGGTAAGCAAGTCGGGTCCAGGTCAAAGAAATGTACTGCATTgaaggtttcatgatgcttgtatctaaaccaacgTAGATAgttttaagattgttctatacatcagttggggtctggATCAACTTCAATATGAGGTCATAAACCTATTATGAAAGTGCATCGTTCTAGCTGcatgggctaatatagtcaaaatgtttgccttggggtaagttgagccaatcgTTGAGCCgtggcaagttgagcaaatttgagtgtttttttcccccaggcGTAATGCAAGCATTATGACTGTGGATATGAGGTAACAGCAGGGCCTAGCCGATGttaaaagtgttttaaaaaagtacaaagtgtttgttaggtgttaatcCTGCATTTAATGCTTAAAATGCTTAAAAGACAAATAAGCGATTgtaattgtg
>TU2266839
TAAGACTTTCTTCAGTCCCTGGCGACTCATCAAAGAGGGTGGACTAGAGCCAGTCCTCCGAGGCCTGTTGGGGACGCCGGCGACTGTAGTGAGCCCAGAAAACCTACTGACTGAGGAGCTGACAGAGAGACTGGTTGTGCTTACTGTCCCAGGGGGCTTGGACTTGGCCGCACTCAACCTGCAGAGGGGACGTGATCATGGACttccagGTTCTGGTGGGAGAGTGAGGGTGTGTTTACACTGGGTCAGAGGGTGGAACTACTAAGGCATTCTCTATCTCGCGTGATCTGTGACAACAGTGAAGTGAAAGAGGCCCCACTTGACCCCTTCAGGTTTGGGAAATACCCTGACGGTTTTCTCTTGTGTGACAATATACCATCAATGAACTTGGAGGCCTGGAGAGAGGAGCCTAGCCCAGACACCTACAGCTAAGACGAGAAGCAAGACATCCTCCATGAAAACATTGGCCTGTGTTTTATTTTGCTCTATGTTTTCATGCTTTTTATCCTGTATATTTTAACTACTGTTTCCCCTGCAACGCCTTTTTATCTTTGTGAA

Function

symbol description
tpo Is expressed in thyroid follicle and thyroid primordium. Human ortholog(s) of this gene implicated in congenital hypothyroidism; glomerulonephritis; and thyroid dyshormonogenesis 2A. Orthologous to human TPO (thyroid peroxidase).

NR:

description
thyroid peroxidase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963018.1 False 2846 mRNA 0.47 10 40147944 40173204
TU2266839 True 558 lncRNA 0.50 4 40148639 40156738

Neighbor

gene id symbol gene type direction distance location
LOC118944315 NA coding downstream 7378 40137426 ~ 40140566 (-)
LOC110505909 cd93 coding downstream 157131 39987835 ~ 39990813 (-)
LOC110505906 LOC106603387 coding downstream 167891 39967887 ~ 39980053 (-)
LOC110505899 LOC106611374 coding downstream 720343 39424465 ~ 39427601 (-)
LOC110505895 nrxn3 coding downstream 899761 38629768 ~ 39248183 (-)
LOC110505924 LOC106606698 coding upstream 3651 40176855 ~ 40236490 (-)
LOC110505928 LOC106611397 coding upstream 154221 40327425 ~ 40335285 (-)
LOC110504256 LOC106611412 coding upstream 192625 40365829 ~ 40387233 (-)
LOC118944271 NA coding upstream 300662 40473866 ~ 40496727 (-)
LOC110505921 LOC106592118 coding upstream 385862 40559066 ~ 40585630 (-)
G1982815 NA non-coding downstream 26152 40121544 ~ 40121792 (-)
G1982814 NA non-coding downstream 26788 40120942 ~ 40121156 (-)
G1982809 NA non-coding downstream 49336 40095902 ~ 40098608 (-)
G1982802 NA non-coding downstream 66232 40081388 ~ 40081712 (-)
G1982794 NA non-coding downstream 90261 40056193 ~ 40057683 (-)
G1982858 NA non-coding upstream 12469 40185673 ~ 40187339 (-)
G1982865 NA non-coding upstream 22582 40195786 ~ 40197573 (-)
G1982866 NA non-coding upstream 22964 40196168 ~ 40199280 (-)
G1982790 NA non-coding upstream 133451 40306655 ~ 40310569 (-)
G1982769 NA other downstream 84063 40048026 ~ 40063881 (-)
G1982679 NA other downstream 242135 39885086 ~ 39905809 (-)
G1982657 emilin1 other downstream 289824 39852183 ~ 39858120 (-)
G1982029 NA other downstream 527735 39619865 ~ 39620209 (-)
G1981964 NA other downstream 578135 39556620 ~ 39569809 (-)
G1983003 NA other upstream 384094 40557298 ~ 40558989 (-)
LOC110504262 ect2l other upstream 767703 40917719 ~ 40944573 (-)
G1983374 NA other upstream 1016764 41189968 ~ 41197087 (-)
G1983984 NA other upstream 1564371 41737575 ~ 41739066 (-)
G1984232 NA other upstream 2094735 42267939 ~ 42270359 (-)
G1982841 NA non-coding upstream 734 40157472 ~ 40158122 (-)

Expression


Co-expression Network