snx9a (LOC105031565)


Basic Information

Item Value
gene id snx9a
gene name LOC105031565
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40689188 ~ 40741739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962284.1
TCCGGAGTTTAGACCCGGGTTTCCGCGGTGATTGGTAAAGAAAAAGACGAGAACGGTGCCCCTCATCTCCGGGGTTTTATCAACCTCAAGAAGAAGCAGTGGCTACCTAGCATGAAACGGCTAATGGCGGTGGTACAGAATCTGATTCCACCATCATGCACTTCCAACCGCTAGCTCTACACAAGGTGAAGGCCCAGGTGATATATGACTTCAGTGCTGAACCAGGAAATAACGAGTTGACAgtcagagaaggagagactgtCACCGTCCTCAATCAGAATGTTGGTGGAGGATGGATAGAGGCTCAGAACTCCAGAGGAGAAAGTGGGCTGGTGCCAGAAGACTACTTAcagGTTGCTAACGGTGACAACCCTTGGTCTGGGGGAGGAGCTTACACCAACAAGACAGCCGGGGGATGGGACACCCAGGGATACGCGCAGACTCAACAGAATGCaggtgatgatgacgatgatggtgAGTGGGACGAAGAGTGGGATGATGCCAGATCAACAGGGGGTTATGGAGAAACTACAGgcgaggaggaaggagaggcgacaggccgcaacacacacacacacatgaagataTCCCTCAACAAGTTTGCGTTCTCTAAGATCCCCAACCCAGAGGTGTACCTCCTGGCTAAACTACCGCCCAAAGGCAAAGACAGACTGGCCATCTATatgggagatGTGGGGCCAGTGTGGCTGTATCCCCAGTCTCCTCTTGACTGTGTCGTGGCTGATCCTAAAAAGGGCTCTAAGATGTATGGGCTGAAGAGTTACATAGAATATCAGGTCACACCCAACACGACCAACAGACCTGTCAATCACAGGTATAAGCATTTTGATTGGCTGTATGAGCGCCTGTTGGAGAAGTTTGGTTCCGCCATCCCCATCCCCTCGCTGCCTGACAAACAAGTCACAGGTCGTTTTGAGGAGGAGTTTATCAAGATGAGGATGGAGAGGCTGCAGGGCTGGATGTGTCGTATGTGTCGCCATCCCGTCGTCTCTAACAGTGACGTCTTCCAACTCTTCCTCACATACAGAGACGAGaagGAGTGGAAAACCgggaagaggagagcagagaaggaTGAGTGTGTTGGACCAATGGTCTTCTCCACCATCGACCCTGAAGCTCCTGAGTTAGACATAATAGAAGTggagcAGAAGTGTGAGTTGTTCAGTAGGTTCACTAAAGAGATGGATGATGGAGTTAAAGACCTGCTGAACGTTGGGAACATACACTGGAAACGCTGCACAGGCCCTCTGCGTAAGGAGTACCAGAAGATTGGGAAAGCCTTTCAGAACCTGTCATCTGTCTTCAACACCAGTGGCTATACAGGAGAGGCCACACTCACAGATGCTCTCACAGCTGCAGGGAAAACATACGAGGAGATCTCACAGATCGTAGCTGAGCAGCCCAGAAAAGACCTTCATTTCCTGATGGAAACCAACAACGAATACAAAGGGTTGCTAGGCTGCTTCCCTGATACTATCGGAGTACACAAGgcggcTATAGAGAAGGTGAGGGAAGGGGACAAGATGGTGGCAGCAGGGAAGATCACCACACAGGATAAAGGGACCATGGCCAAACGCATTAGCATCATGTGCTACTCACtacaagCTGAGATGAACCACTTCCATAGCAACCGTATCTATGACTACAACAGAGTCATGCAGCTCTACCTGGAAGAACAGATCAGGTTCTATGAAACGATTGCTGAGAAGCTGAAGCAAACCCTGGGCCAGTTTACCACCCTGTAaagtgaaacacacacaaaccttgTTCTTCTCCTTTCTGCTTCGTGGACCAACAACCTTAAACAGGATGGACTGGTGTCTGGATGATGTAGTTGGAAGACAGTATCACCCTGTGCCTTTTAACTACACAAGGAGTTAAACATAACGATGTTATATTTTAATATCACAGTGCAGAACAATATGTTAAATGTTGTTTCATAACCCTCTAATTATCTATTTTATTTATATTATAGATATATGAAATGGTTGTATTTCCTGTTTATTTTGGTTggatgttttcactttgtcttaTTATTCTTATTCTGGATAATGTGATTTAGAGAGGGgatacagaggggagagagagacagaggggagagagagacagagggcagacagaggggagagagagacagaggggagagagagggg
>XM_036962282.1
AGTTTAGACCCGGGTTTCCGCGGTGATTGGTAAAGAAAAAGACGAGAACGGTGCCCCTCATCTCCGGGGTTTTATCAACCTCAAGAAGAAGCAGTGGCTACCTAGCATGAAACGGCTAATGGCGGTGGTACAGAATCTGATTCCACCATCATGCACTTCCAACCGCTAGCTCTACACAAGGTGAAGGCCCAGGTGATATATGACTTCAGTGCTGAACCAGGAAATAACGAGTTGACAgtcagagaaggagagactgtCACCGTCCTCAATCAGAATGTTGGTGGAGGATGGATAGAGGCTCAGAACTCCAGAGGAGAAAGTGGGCTGGTGCCAGAAGACTACTTAcagGTTGGTGCGGTGTCATCCACAACACCAGAGACAGCTACCTATCCGAATGCCTACAGCCCCGAGTCCAGCAACAGCACAAACACTCAGGTTGCTAACGGTGACAACCCTTGGTCTGGGGGAGGAGCTTACACCAACAAGACAGCCGGGGGATGGGACACCCAGGGATACGCGCAGACTCAACAGAATGCaggtgatgatgacgatgatggtgAGTGGGACGAAGAGTGGGATGATGCCAGATCAACAGGGGGTTATGGAGAAACTACAGgcgaggaggaaggagaggcgacaggccgcaacacacacacacacatgaagataTCCCTCAACAAGTTTGCGTTCTCTAAGATCCCCAACCCAGAGGTGTACCTCCTGGCTAAACTACCGCCCAAAGGCAAAGACAGACTGGCCATCTATatgggagatGTGGGGCCAGTGTGGCTGTATCCCCAGTCTCCTCTTGACTGTGTCGTGGCTGATCCTAAAAAGGGCTCTAAGATGTATGGGCTGAAGAGTTACATAGAATATCAGGTCACACCCAACACGACCAACAGACCTGTCAATCACAGGTATAAGCATTTTGATTGGCTGTATGAGCGCCTGTTGGAGAAGTTTGGTTCCGCCATCCCCATCCCCTCGCTGCCTGACAAACAAGTCACAGGTCGTTTTGAGGAGGAGTTTATCAAGATGAGGATGGAGAGGCTGCAGGGCTGGATGTGTCGTATGTGTCGCCATCCCGTCGTCTCTAACAGTGACGTCTTCCAACTCTTCCTCACATACAGAGACGAGaagGAGTGGAAAACCgggaagaggagagcagagaaggaTGAGTGTGTTGGACCAATGGTCTTCTCCACCATCGACCCTGAAGCTCCTGAGTTAGACATAATAGAAGTggagcAGAAGTGTGAGTTGTTCAGTAGGTTCACTAAAGAGATGGATGATGGAGTTAAAGACCTGCTGAACGTTGGGAACATACACTGGAAACGCTGCACAGGCCCTCTGCGTAAGGAGTACCAGAAGATTGGGAAAGCCTTTCAGAACCTGTCATCTGTCTTCAACACCAGTGGCTATACAGGAGAGGCCACACTCACAGATGCTCTCACAGCTGCAGGGAAAACATACGAGGAGATCTCACAGATCGTAGCTGAGCAGCCCAGAAAAGACCTTCATTTCCTGATGGAAACCAACAACGAATACAAAGGGTTGCTAGGCTGCTTCCCTGATACTATCGGAGTACACAAGgcggcTATAGAGAAGGTGAGGGAAGGGGACAAGATGGTGGCAGCAGGGAAGATCACCACACAGGATAAAGGGACCATGGCCAAACGCATTAGCATCATGTGCTACTCACtacaagCTGAGATGAACCACTTCCATAGCAACCGTATCTATGACTACAACAGAGTCATGCAGCTCTACCTGGAAGAACAGATCAGGTTCTATGAAACGATTGCTGAGAAGCTGAAGCAAACCCTGGGCCAGTTTACCACCCTGTAaagtgaaacacacacaaaccttgTTCTTCTCCTTTCTGCTTCGTGGACCAACAACCTTAAACAGGATGGACTGGTGTCTGGATGATGTAGTTGGAAGACAGTATCACCCTGTGCCTTTTAACTACACAAGGAGTTAAACATAACGATGTTATATTTTAATATCACAGTGCAGAACAATATGTTAAATGTTGTTTCATAACCCTCTAATTATCTATTTTATTTATATTATAGATATATGAAATGGTTGTATTTCCTGTTTATTTTGGTTggatgttttcactttgtcttaTTATTCTTATTCTGGATAATGTGATTTAGAGAGGGgatacagaggggagagagagacagaggggagagagagacagagggcagacagaggggagagagagacagaggggagagagaggg
>XM_036962283.1
CAGTCAATATGAATTACCTCTCTTAACAAGGTCACAAATAATTTGCAGTTGACATTTGCATCAATTAATTTAGGCTAATATTTCCCCTTTTGCCTGTTGACATAGTTTCCATCTCTCACTAAGAAGTTGAGAGTTCCTGATCTGTGAATGGTTGTCTTTACTCGGTGTATTTACTCAGTCAAACCTATGACCGAGCAGCTAAAGGAAAATAAACACAATTGTCTGTCCGACTGTTGCCACGTTCATGTGCTATTCGAAAATACAAAACTAGGAAATGTCCGACTTGTTAATAGGTTGAACGCGCGGCACGTGTATATGTACAACAGGTTAGCAAGTCGGACATTTCCGAGTTTCGTAGACTCCGACGAGTACTTGAACGCGGCACGTATCCACACCCCTGTTACTTGTTCTACATTTCTGCTTGGAGGAAGTGGCCCCTTTCCTCACCCTGTCGCTCTTTACGGCGGGGATACAAAATTACTAACAAACTATTCTGTCAGGTGAAAATTAGGCAATTGTCGTCCTAGAAAATTGAGAAATCGTCTCTGCAGAATAGCACGTACGTTGTAACAACATAGTTGTAAGAAGATACGCCAGAGTGGATCGTTTTGAGCTGGAGTAGCCTCCGTCTGCTTTGTTTACATTGGGATTGTTTTGATGCGGGGTGTTTTCACCGGGACGTTTTTGAGTGGAAAACGACTGTAAATCCTGCAACGATGGCAATGCAGGCCCAGGTGATATATGACTTCAGTGCTGAACCAGGAAATAACGAGTTGACAgtcagagaaggagagactgtCACCGTCCTCAATCAGAATGTTGGTGGAGGATGGATAGAGGCTCAGAACTCCAGAGGAGAAAGTGGGCTGGTGCCAGAAGACTACTTAcagGTTGGTGCGGTGTCATCCACAACACCAGAGACAGCTACCTATCCGAATGCCTACAGCCCCGAGTCCAGCAACAGCACAAACACTCAGGTTGCTAACGGTGACAACCCTTGGTCTGGGGGAGGAGCTTACACCAACAAGACAGCCGGGGGATGGGACACCCAGGGATACGCGCAGACTCAACAGAATGCaggtgatgatgacgatgatggtgAGTGGGACGAAGAGTGGGATGATGCCAGATCAACAGGGGGTTATGGAGAAACTACAGgcgaggaggaaggagaggcgacaggccgcaacacacacacacacatgaagataTCCCTCAACAAGTTTGCGTTCTCTAAGATCCCCAACCCAGAGGTGTACCTCCTGGCTAAACTACCGCCCAAAGGCAAAGACAGACTGGCCATCTATatgggagatGTGGGGCCAGTGTGGCTGTATCCCCAGTCTCCTCTTGACTGTGTCGTGGCTGATCCTAAAAAGGGCTCTAAGATGTATGGGCTGAAGAGTTACATAGAATATCAGGTCACACCCAACACGACCAACAGACCTGTCAATCACAGGTATAAGCATTTTGATTGGCTGTATGAGCGCCTGTTGGAGAAGTTTGGTTCCGCCATCCCCATCCCCTCGCTGCCTGACAAACAAGTCACAGGTCGTTTTGAGGAGGAGTTTATCAAGATGAGGATGGAGAGGCTGCAGGGCTGGATGTGTCGTATGTGTCGCCATCCCGTCGTCTCTAACAGTGACGTCTTCCAACTCTTCCTCACATACAGAGACGAGaagGAGTGGAAAACCgggaagaggagagcagagaaggaTGAGTGTGTTGGACCAATGGTCTTCTCCACCATCGACCCTGAAGCTCCTGAGTTAGACATAATAGAAGTggagcAGAAGTGTGAGTTGTTCAGTAGGTTCACTAAAGAGATGGATGATGGAGTTAAAGACCTGCTGAACGTTGGGAACATACACTGGAAACGCTGCACAGGCCCTCTGCGTAAGGAGTACCAGAAGATTGGGAAAGCCTTTCAGAACCTGTCATCTGTCTTCAACACCAGTGGCTATACAGGAGAGGCCACACTCACAGATGCTCTCACAGCTGCAGGGAAAACATACGAGGAGATCTCACAGATCGTAGCTGAGCAGCCCAGAAAAGACCTTCATTTCCTGATGGAAACCAACAACGAATACAAAGGGTTGCTAGGCTGCTTCCCTGATACTATCGGAGTACACAAGgcggcTATAGAGAAGGTGAGGGAAGGGGACAAGATGGTGGCAGCAGGGAAGATCACCACACAGGATAAAGGGACCATGGCCAAACGCATTAGCATCATGTGCTACTCACtacaagCTGAGATGAACCACTTCCATAGCAACCGTATCTATGACTACAACAGAGTCATGCAGCTCTACCTGGAAGAACAGATCAGGTTCTATGAAACGATTGCTGAGAAGCTGAAGCAAACCCTGGGCCAGTTTACCACCCTGTAaagtgaaacacacacaaaccttgTTCTTCTCCTTTCTGCTTCGTGGACCAACAACCTTAAACAGGATGGACTGGTGTCTGGATGATGTAGTTGGAAGACAGTATCACCCTGTGCCTTTTAACTACACAAGGAGTTAAACATAACGATGTTATATTTTAATATCACAGTGCAGAACAATATGTTAAATGTTGTTTCATAACCCTCTAATTATCTATTTTATTTATATTATAGATATATGAAATGGTTGTATTTCCTGTTTATTTTGGTTggatgttttcactttgtcttaTTATTCTTATTCTGGATAATGTGATTTAGAGAGGGgatacagaggggagagagagacagaggggagagagagacagagggcagacagaggggagagagagacagaggggagagagagg

Function

NR:

description
sorting nexin-9-like

GO:

id name namespace
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962284.1 False 2174 mRNA 0.48 18 40689188 40741739
XM_036962282.1 False 2255 mRNA 0.48 19 40689193 40741738
XM_036962283.1 True 2796 mRNA 0.47 18 40707890 40741737

Neighbor

gene id symbol gene type direction distance location
LOC118944272 NA coding upstream 109530 40578668 ~ 40579658 (+)
LOC110505917 LOC106611409 coding upstream 234394 40440430 ~ 40454794 (+)
LOC110505926 LOC106611410 coding upstream 263480 40412129 ~ 40427679 (+)
LOC110505920 LOC106611413 coding upstream 325019 40356100 ~ 40364169 (+)
LOC110505913 LOC106611411 coding upstream 333230 40341646 ~ 40355958 (+)
pomca LOC100510783 coding downstream 77957 40819696 ~ 40822826 (+)
dnajc27 LOC106611405 coding downstream 87307 40829046 ~ 40860054 (+)
si:ch211-132f19.7 LOC106611404 coding downstream 126362 40868101 ~ 40891112 (+)
LOC110504259 LOC106603281 coding downstream 555693 41297432 ~ 41350749 (+)
LOC110505965 trim9 coding downstream 805632 41547371 ~ 41622795 (+)
G1982496 NA non-coding upstream 22953 40665070 ~ 40666235 (+)
G1982455 LOC106611408 non-coding upstream 55043 40606315 ~ 40634145 (+)
G1982457 NA non-coding upstream 76896 40612001 ~ 40612292 (+)
G1982439 NA non-coding upstream 103768 40584577 ~ 40585420 (+)
G1982430 NA non-coding upstream 112825 40567283 ~ 40576363 (+)
G1982530 NA non-coding downstream 29938 40771677 ~ 40773522 (+)
G1982540 NA non-coding downstream 53049 40794788 ~ 40796542 (+)
G1982544 NA non-coding downstream 72603 40814342 ~ 40814544 (+)
G1982546 NA non-coding downstream 74115 40815854 ~ 40816129 (+)
G1982548 NA non-coding downstream 75165 40816904 ~ 40817166 (+)
G1982355 NA other upstream 298781 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1135696 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1594374 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 2114828 38565810 ~ 38575881 (+)
G1980792 NA other upstream 2160083 38528607 ~ 38529105 (+)
G1983277 NA other downstream 305812 41047551 ~ 41047902 (+)
G1983387 NA other downstream 473736 41215475 ~ 41216752 (+)
G1983499 NA other downstream 706663 41448402 ~ 41449340 (+)
LOC110505959 LOC106611457 other downstream 998468 41740173 ~ 41757394 (+)

Expression


Co-expression Network