Gene
RNA
| Item | Value |
|---|---|
| gene id | pomca |
| gene name | LOC100510783 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 40819696 ~ 40822826 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| pro-opiomelanocortin A1 precursor |
| id | name | namespace |
|---|---|---|
| GO:0007218 | neuropeptide signaling pathway | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005179 | hormone activity | molecular_function |
| id | description |
|---|---|
| K05228 | POMC; proopiomelanocortin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036963012.1 | True | 935 | mRNA | 0.58 | 3 | 40819696 | 40822826 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| snx9a | LOC105031565 | coding | upstream | 77957 | 40689188 ~ 40741739 (+) |
| LOC118944272 | NA | coding | upstream | 240038 | 40578668 ~ 40579658 (+) |
| LOC110505917 | LOC106611409 | coding | upstream | 364902 | 40440430 ~ 40454794 (+) |
| LOC110505926 | LOC106611410 | coding | upstream | 393988 | 40412129 ~ 40427679 (+) |
| LOC110505920 | LOC106611413 | coding | upstream | 455527 | 40356100 ~ 40364169 (+) |
| dnajc27 | LOC106611405 | coding | downstream | 6220 | 40829046 ~ 40860054 (+) |
| si:ch211-132f19.7 | LOC106611404 | coding | downstream | 45275 | 40868101 ~ 40891112 (+) |
| LOC110504259 | LOC106603281 | coding | downstream | 474606 | 41297432 ~ 41350749 (+) |
| LOC110505965 | trim9 | coding | downstream | 724545 | 41547371 ~ 41622795 (+) |
| LOC110505964 | LOC106611459 | coding | downstream | 813330 | 41636156 ~ 41666062 (+) |
| G1982548 | NA | non-coding | upstream | 2530 | 40816904 ~ 40817166 (+) |
| G1982546 | NA | non-coding | upstream | 3567 | 40815854 ~ 40816129 (+) |
| G1982544 | NA | non-coding | upstream | 5152 | 40814342 ~ 40814544 (+) |
| G1982540 | NA | non-coding | upstream | 23154 | 40794788 ~ 40796542 (+) |
| G1982530 | NA | non-coding | upstream | 46174 | 40771677 ~ 40773522 (+) |
| G1982552 | NA | non-coding | downstream | 4815 | 40827641 ~ 40827840 (+) |
| G1982561 | NA | non-coding | downstream | 22012 | 40844838 ~ 40846735 (+) |
| G1982562 | NA | non-coding | downstream | 22672 | 40845498 ~ 40853899 (+) |
| G1982567 | NA | non-coding | downstream | 32340 | 40855166 ~ 40855904 (+) |
| G1983146 | NA | non-coding | downstream | 69197 | 40892023 ~ 40892718 (+) |
| G1982355 | NA | other | upstream | 429289 | 40389658 ~ 40390407 (+) |
| LOC110505902 | LOC106611388 | other | upstream | 1266204 | 39543907 ~ 39557667 (+) |
| G1981068 | NA | other | upstream | 1724882 | 39036366 ~ 39094814 (+) |
| LOC110505893 | dio2 | other | upstream | 2245336 | 38565810 ~ 38575881 (+) |
| G1980792 | NA | other | upstream | 2290591 | 38528607 ~ 38529105 (+) |
| G1983277 | NA | other | downstream | 224725 | 41047551 ~ 41047902 (+) |
| G1983387 | NA | other | downstream | 392649 | 41215475 ~ 41216752 (+) |
| G1983499 | NA | other | downstream | 625576 | 41448402 ~ 41449340 (+) |
| LOC110505959 | LOC106611457 | other | downstream | 917381 | 41740173 ~ 41757394 (+) |
