LOC110505965 (trim9)


Basic Information

Item Value
gene id LOC110505965
gene name trim9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41547371 ~ 41622795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962969.1
TGAAAAAGACGACCGCTGGCAGTACACGCAACAGCATTCTGATTTATCAAATATAACAACTTATCTGGAATTGGGAGATACTATTTCTCTCCGAagtgaatttaaaatggatgaaatggaAGAAGAATTAAAATGCCCTGTCTGCGGATCTTTTTTCCGGGAGCCGATCCTTCTACCGTGCTCCCACAACATTTGCCTGGCTTGCGCTCGGAATATCCTAGTACAGACACCAGACGCCGAATCTCCACAGAGTAGCCGTGCGTCTGGCTCGGGGCTATCTGATTATGACTATCTAGACCTGGATAAGATGAGCTTGTACAGCGAAGCGGACAGTGGATATGGCTCCTATGGTGGATTCGTAAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAATGGTGTGCGTGTATTCCCCCCTGCCGTCCCCCAACCTCCTGCTCAGCACCACTTACTAGGACACCAGGGCTCTCTACCCCCTATCCCCCGGAACTCCTGTATCACCTGCCCGCAATGCCATCGCAGCCTCAACCTGGACGAAAGGGGGCTCCGCGGGTTTGCCAAGAACCGGGTGCTGGAAGGGGTTGTGGACCGGTACCAGCAGAGCAAAGCAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGACGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCCCCTCGAGGTCCGCTAGCCAAGCATCGCCTCGTGCCCCCGGCGCACGGCCGGGTAAGCCGTCGGACAAGTCCCCGGAAGATCTCTACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAAATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAGCACGGAACACATGAAGTCAAGGCTCTGGGAGCTATGTGGAAACTGCACAAGGGCCAGCTGTCCCAGGCCCTCAACATCCTGTCTGACAGAGCTACCAAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGCCCGCTGATGGTCCAGGGAGACCCTTACTAGTGACATCAGGGTGGGGAACACTGAAgGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATCGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAAGGAGCATGAGCACAAGCTGAAGgtggtgagggatcAAATATCTCATTGTACAGTGAAGCTGCGCCAGACAACAGGCCTGATGGAATACTGTGTGGAGGTCATCAAGGAGAACGACCCCAGCGGGTtcctacagATCTCAGACGCCCTGATCAGGAGGGTACACATGACGGAGGGCCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACCTGACCCTGGACAGCGGGCCCCTGTTACAGACCATCCACCAACTAGACTTCGTACAGATGAAagTCCCAGCAGCCCCCATGCTCCAGCTGGAGGAGTGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAGCCACCTCTCTCGACCATCGCCGTGGATGGATACATCCTGGAGCTGGACGACGGCAACGGGGGACAGTACAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGTGTGGGACAGTACAGCAAGATACTGGCCATGCAGACCTCCGAGATTGCCTGGTTCACCTTTGACCCCGCGTCAGCCCACCCTGACATCATCCTCTCCAATGACAACCTGACAGTGACGTGCAACAGCTACGATGACAGGGTGGTCATGGGTAATTCAGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTACGACAACCACCCGGACCCTGCGTTTGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGTAAAGACGATAGGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTAAAGGGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAAGGGTCCTCATCTTCCTCATCAACGATGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGCTCTACTACCCTGCTATCAGCCTCAACCGAAACGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACTCCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAAGACAAAGGGCtaacgtcccaaatggcacactatagCGCACCCTATTCCCCTTCATAGTGCACAGggctcatagagctctggtcaaatgtagtgcactatatagggaatagggtgcc
>XM_036962970.1
atggatgaaatggaAGAAGAATTAAAATGCCCTGTCTGCGGATCTTTTTTCCGGGAGCCGATCCTTCTACCGTGCTCCCACAACATTTGCCTGGCTTGCGCTCGGAATATCCTAGTACAGACACCAGACGCCGAATCTCCACAGAGTAGCCGTGCGTCTGGCTCGGGGCTATCTGATTATGACTATCTAGACCTGGATAAGATGAGCTTGTACAGCGAAGCGGACAGTGGATATGGCTCCTATGGTGGATTCGTAAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAATGGTGTGCGTGTATTCCCCCCTGCCGTCCCCCAACCTCCTGCTCAGCACCACTTACTAGGACACCAGGGCTCTCTACCCCCTATCCCCCGGAACTCCTGTATCACCTGCCCGCAATGCCATCGCAGCCTCAACCTGGACGAAAGGGGGCTCCGCGGGTTTGCCAAGAACCGGGTGCTGGAAGGGGTTGTGGACCGGTACCAGCAGAGCAAAGCAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGACGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCCCCTCGAGGTCCGCTAGCCAAGCATCGCCTCGTGCCCCCGGCGCACGGCCGGGTAAGCCGTCGGACAAGTCCCCGGAAGATCTCTACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAAATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAGCACGGAACACATGAAGTCAAGGCTCTGGGAGCTATGTGGAAACTGCACAAGGGCCAGCTGTCCCAGGCCCTCAACATCCTGTCTGACAGAGCTACCAAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATCGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAAGGAGCATGAGCACAAGCTGAAGgtggtgagggatcAAATATCTCATTGTACAGTGAAGCTGCGCCAGACAACAGGCCTGATGGAATACTGTGTGGAGGTCATCAAGGAGAACGACCCCAGCGGGTtcctacagATCTCAGACGCCCTGATCAGGAGGGTACACATGACGGAGGGCCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACCTGACCCTGGACAGCGGGCCCCTGTTACAGACCATCCACCAACTAGACTTCGTACAGATGAAagTCCCAGCAGCCCCCATGCTCCAGCTGGAGGAGTGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAGCCACCTCTCTCGACCATCGCCGTGGATGGATACATCCTGGAGCTGGACGACGGCAACGGGGGACAGTACAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGTGTGGGACAGTACAGCAAGATACTGGCCATGCAGACCTCCGAGATTGCCTGGTTCACCTTTGACCCCGCGTCAGCCCACCCTGACATCATCCTCTCCAATGACAACCTGACAGTGACGTGCAACAGCTACGATGACAGGGTGGTCATGGGTAATTCAGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTACGACAACCACCCGGACCCTGCGTTTGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGTAAAGACGATAGGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTAAAGGGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAAGGGTCCTCATCTTCCTCATCAACGATGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGCTCTACTACCCTGCTATCAGCCTCAACCGAAACGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACTCCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAAGACAAAGGGCtaacgtcccaaatggcacactatagCGCACCCTATTCCCCTTCATAGTGCACAGggctcatagagctctggtcaaatgtagtgcactatatagggaatagggtgcc

Function

symbol description
trim9 Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in head. Orthologous to human TRIM9 (tripartite motif containing 9).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM9 isoform X4

GO: NA

KEGG:

id description
K10649 TRIM9_67; tripartite motif-containing protein 9/67

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962969.1 False 2464 mRNA 0.56 11 41547371 41622795
XM_036962970.1 True 2301 mRNA 0.57 10 41547477 41622795

Neighbor

gene id symbol gene type direction distance location
LOC110504259 LOC106603281 coding upstream 196622 41297432 ~ 41350749 (+)
si:ch211-132f19.7 LOC106611404 coding upstream 656259 40868101 ~ 40891112 (+)
dnajc27 LOC106611405 coding upstream 687317 40829046 ~ 40860054 (+)
pomca LOC100510783 coding upstream 724545 40819696 ~ 40822826 (+)
snx9a LOC105031565 coding upstream 805632 40689188 ~ 40741739 (+)
LOC110505964 LOC106611459 coding downstream 13361 41636156 ~ 41666062 (+)
LOC110505960 LOC106611458 coding downstream 54549 41677344 ~ 41737128 (+)
LOC110505959 LOC106611457 coding downstream 117378 41740173 ~ 41757394 (+)
LOC110504274 LOC106611444 coding downstream 158476 41781271 ~ 41937779 (+)
LOC110498275 sos2 coding downstream 322704 41945499 ~ 42020153 (+)
G1983543 NA non-coding upstream 20265 41526903 ~ 41527106 (+)
G1983542 NA non-coding upstream 21181 41525827 ~ 41526190 (+)
G1983541 NA non-coding upstream 21607 41525478 ~ 41525764 (+)
G1983536 NA non-coding upstream 27362 41513576 ~ 41520009 (+)
G1983514 NA non-coding upstream 61532 41485314 ~ 41485839 (+)
G1983533 NA non-coding downstream 3273 41626068 ~ 41628090 (+)
G1983583 NA non-coding downstream 32454 41655249 ~ 41655737 (+)
G1983584 NA non-coding downstream 38406 41661201 ~ 41661706 (+)
G1983612 NA non-coding downstream 107758 41730553 ~ 41778877 (+)
G1983630 NA non-coding downstream 131826 41754621 ~ 41755446 (+)
G1983499 NA other upstream 98031 41448402 ~ 41449340 (+)
G1983387 NA other upstream 330619 41215475 ~ 41216752 (+)
G1983277 NA other upstream 499469 41047551 ~ 41047902 (+)
G1982355 NA other upstream 1156964 40389658 ~ 40390407 (+)
G1983721 NA other downstream 440230 42063025 ~ 42103896 (+)
G1983777 NA other downstream 609445 42232240 ~ 42232904 (+)
G1983836 NA other downstream 639432 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 796365 42419107 ~ 42454007 (+)

Expression


Co-expression Network