LOC110505964 (LOC106611459)


Basic Information

Item Value
gene id LOC110505964
gene name LOC106611459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41636156 ~ 41666062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962230.1
ACTACCTAAACTTAATTTCTCCACTTTAAGAGTTGAAATTGAAAGACTGCCAGCAGCCGTTTTGTTCAGCAGCATGGCggctcctctcactgaccaggagAAGCGTAAACAGATCAGTATCAGAGGAATTGTCGGGGTGGAGAACGTCGCAGAGTTGAAGAAAGGTTTTAACCGACACCTCCACTTCACTTTGGTCAAAGACCGGAATGTAGCGACGCCGCGGGATTATTACTTCGCCCTCGCGCACACGGTTCGAGATCACCTGGTGGGAAGATGGATCAGAACCCAGCAGTTCTACTACGAGACCGATCCCAAGCGAGTGTACTACCTCTCCCTGGAGTTCTACATGGGCAGAACCCTCCAGAACACCATGATTAACCTGGGGCTGCAGAACGCCTGTGACGAGGCCATCTACCAGCTGGGTTTGGACATGGAGGATCtggaagagatggaggaagatgcAGGGCTGGGGAACGGAGGCCTGGGCAGACTGGCAGCATGTTTCCTGGACTCGATGGCCACCCTGGGTCTGGCAGCGTACGGTTATGGCATCCGTTATGAGTATGGGATCTTCAATCAGAAGATCAAGAACGGCTGGCAGGTGGAAGAAGCAGACGATTGGCTGCGTCATGGTAACCCTTGGGAGAAGGCCCGCCCTGAGTACATGCTACCAGTGCACTTCTACGGCAGAGTGGAGGAGTCTAAGGAAGGGGCCAAATGGGTGGACACACAGGTGGTCCTTGCTATGCCCTATGACACGCCCATCCCTGGATATATgaacaacacagtcaacaccatgaGGCTGTGGTCTGCCAGAGCTCCCAACGACTTCAACCTGATGGACTTCAATGTTGGAGATTACATCCAAGCTGTTCTGGACAGGAATCTGGCGGAGAATATTTCTCGTGTCCTCTACCCCAACGATAACTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCTACCCTCCAGGACATCATCAGACGCTTCAAGAACTCCAAGAAGGGCTTCTCCGGCCCGGTCTCCTTCGACAGCTTCCCAGAGAAAGTGGCCATCCAGCTGAATGACACTCATCCTGCCATGGCCATCCCAGAGCTCATGAGGGTCTTTGTGGACATTGAGAAACTCGACTGGGACACGGCGTGGGCCATCACCAAGCGGACCTTTGCGTACACCAATCACACGGTGCTTCCCGAGGCTCTGGAGCGCTGGCCCATTGGACTGCTGGAGACCCTGCTGCCCAGACACCTCCAGATCATCTACAGGATCAACCAGGGCCACCTGGACGAGATTTCGGCTCTCTTCCCAGAGGACATGGATCGGATGCGCAGGATGTCTCTGATCGAGGAGGACGGGGGAAAGAGGGTCAACATGGCTCACCTGTGCATCGTGGGATCTCACGCCGTCAACGGAGTCGCTGAGATACACTCCAACATCATCAAGACTGACGTGTTCCGAGACTTCAGCGAATTAGAACCGGAGAAGTTCCAGAACAAGACCAATGGCATCACTCCTAGACGCTGGCTCCTCCTCTGTAACCCGGGATTGGCTGAGCTCATTGCTGAGGCCATTGGGGAGGAATATGTGAAGGACCTCAGCCAGTTACAGAAGCTCAATGAGCTGGTAGACGATGATACCTTCATTAGAGATGTGTCTAAAGTCAAGCAGGATAACAAGGAGAAGTTTTCCCAGTACCTGGAGAAAGAGTACATGGTGGAAATCAACCCGTCCTCCATGTTTGATGTTCACGTCAAGAGGATTCACGAGTACAAGCGCCAGCTCCTCAACTGCCTTCACATCGTCACCATGTACAACcGCATCAGGAAGAACCCAAAAGCACATTTTGTTCCCCGGACTGTGATCATTGGTGGCAAGGCTGCGCCGGGGTACCACATGGCCAAGATGATCATCAAGCTGATCACGGCTGTGGGAGAGGTGGTCAACAAAGATCCTGTGGTGGGCAGCAAGCTGAAGGTCATCTACCTGGAGAACTACAGAGTCTCTCTGGCTGAGAAAGTAATCCCAGCCACAGACCTGTCTGAGCAGATCTCCACAGCTGGCACGGAGGCGTCCGGCACCGGCAACATGAAGTTCATGCTGAACGGAGCGCTCACCATCGGCACCATGGACGGAGCCAACGTAGAGATGGCCGAGGAGGCTGGAGAGGAGAACATGTTCATCTTCGGCATGAGGGTGGAGGACGTGGCAGAGATGGACGCAcagggCTACGATGCCATGACGTATTACCAGAAGATTCCAGAACTGAAGCAAGCCATTGATCAGATCAACAGTGGATTCTTCTGTCCCAAACAACCAGAGCTCTTCAAAGACGTCAccaatatgcttttcaaccacgACCGCTTCAAGGTGTTTGCAGACTATGAGGACTACATAAAGTGCCAGGAGAAAGTCAACGAACTATATCAGGTAATCATCATTATCCTCCATGTACCTCTAGTTAATGACTATATCAGGTAATCATCATTATTCCCC
>XM_036962229.1
ACCTAAACTTAATTTCTCCACTTTAAGAGTTGAAATTGAAAGACTGCCAGCAGCCGTTTTGTTCAGCAGCATGGCggctcctctcactgaccaggagAAGCGTAAACAGATCAGTATCAGAGGAATTGTCGGGGTGGAGAACGTCGCAGAGTTGAAGAAAGGTTTTAACCGACACCTCCACTTCACTTTGGTCAAAGACCGGAATGTAGCGACGCCGCGGGATTATTACTTCGCCCTCGCGCACACGGTTCGAGATCACCTGGTGGGAAGATGGATCAGAACCCAGCAGTTCTACTACGAGACCGATCCCAAGCGAGTGTACTACCTCTCCCTGGAGTTCTACATGGGCAGAACCCTCCAGAACACCATGATTAACCTGGGGCTGCAGAACGCCTGTGACGAGGCCATCTACCAGCTGGGTTTGGACATGGAGGATCtggaagagatggaggaagatgcAGGGCTGGGGAACGGAGGCCTGGGCAGACTGGCAGCATGTTTCCTGGACTCGATGGCCACCCTGGGTCTGGCAGCGTACGGTTATGGCATCCGTTATGAGTATGGGATCTTCAATCAGAAGATCAAGAACGGCTGGCAGGTGGAAGAAGCAGACGATTGGCTGCGTCATGGTAACCCTTGGGAGAAGGCCCGCCCTGAGTACATGCTACCAGTGCACTTCTACGGCAGAGTGGAGGAGTCTAAGGAAGGGGCCAAATGGGTGGACACACAGGTGGTCCTTGCTATGCCCTATGACACGCCCATCCCTGGATATATgaacaacacagtcaacaccatgaGGCTGTGGTCTGCCAGAGCTCCCAACGACTTCAACCTGATGGACTTCAATGTTGGAGATTACATCCAAGCTGTTCTGGACAGGAATCTGGCGGAGAATATTTCTCGTGTCCTCTACCCCAACGATAACTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCTACCCTCCAGGACATCATCAGACGCTTCAAGAACTCCAAGAAGGGCTTCTCCGGCCCGGTCTCCTTCGACAGCTTCCCAGAGAAAGTGGCCATCCAGCTGAATGACACTCATCCTGCCATGGCCATCCCAGAGCTCATGAGGGTCTTTGTGGACATTGAGAAACTCGACTGGGACACGGCGTGGGCCATCACCAAGCGGACCTTTGCGTACACCAATCACACGGTGCTTCCCGAGGCTCTGGAGCGCTGGCCCATTGGACTGCTGGAGACCCTGCTGCCCAGACACCTCCAGATCATCTACAGGATCAACCAGGGCCACCTGGACGAGATTTCGGCTCTCTTCCCAGAGGACATGGATCGGATGCGCAGGATGTCTCTGATCGAGGAGGACGGGGGAAAGAGGGTCAACATGGCTCACCTGTGCATCGTGGGATCTCACGCCGTCAACGGAGTCGCTGAGATACACTCCAACATCATCAAGACTGACGTGTTCCGAGACTTCAGCGAATTAGAACCGGAGAAGTTCCAGAACAAGACCAATGGCATCACTCCTAGACGCTGGCTCCTCCTCTGTAACCCGGGATTGGCTGAGCTCATTGCTGAGGCCATTGGGGAGGAATATGTGAAGGACCTCAGCCAGTTACAGAAGCTCAATGAGCTGGTAGACGATGATACCTTCATTAGAGATGTGTCTAAAGTCAAGCAGGATAACAAGGAGAAGTTTTCCCAGTACCTGGAGAAAGAGTACATGGTGGAAATCAACCCGTCCTCCATGTTTGATGTTCACGTCAAGAGGATTCACGAGTACAAGCGCCAGCTCCTCAACTGCCTTCACATCGTCACCATGTACAACcGCATCAGGAAGAACCCAAAAGCACATTTTGTTCCCCGGACTGTGATCATTGGTGGCAAGGCTGCGCCGGGGTACCACATGGCCAAGATGATCATCAAGCTGATCACGGCTGTGGGAGAGGTGGTCAACAAAGATCCTGTGGTGGGCAGCAAGCTGAAGGTCATCTACCTGGAGAACTACAGAGTCTCTCTGGCTGAGAAAGTAATCCCAGCCACAGACCTGTCTGAGCAGATCTCCACAGCTGGCACGGAGGCGTCCGGCACCGGCAACATGAAGTTCATGCTGAACGGAGCGCTCACCATCGGCACCATGGACGGAGCCAACGTAGAGATGGCCGAGGAGGCTGGAGAGGAGAACATGTTCATCTTCGGCATGAGGGTGGAGGACGTGGCAGAGATGGACGCAcagggCTACGATGCCATGACGTATTACCAGAAGATTCCAGAACTGAAGCAAGCCATTGATCAGATCAACAGTGGATTCTTCTGTCCCAAACAACCAGAGCTCTTCAAAGACGTCAccaatatgcttttcaaccacgACCGCTTCAAGGTGTTTGCAGACTATGAGGACTACATAAAGTGCCAGGAGAAAGTCAACGAACTATATCAGAACCTGAGGGAGTGGACCAAGATGGTGATCAAGAACATCGCTGCGTCTGGGAAGTTCTCTAGCGACCGCACCATCACCGACTACGCCACGGAGGTGTGGGGGGTGGAGCCTACAGATCTGAAGATCCCACCCCCCAATGAGCCACGCGAGGCCCTCGACGAGACGGCCAGGGCGCTGAGGGAGAAGTGAGGCTGCCTGGTGTGGCGTGACCAGGGTGAAGTTACCCCTAGATGCTGTTCTAGTCAGTTTAGCGTCCAGTCcacactaatggttaaggttaggattgggagaTGGGGAAGCTAATCCTTGACCTGTACCTAGGGAAAACTTCACCCCAGATTGCCTGCCGTTATTTAAAGGGAAAATCTAAAAATATGTAACTCAATAAACGGAGCTCTTTATGTAAAGCAGTTGACTACTTAATAACAGTCTGTTACATACTTACTTTCAGCATAAACAAACAGTGTTCTATTTTTCTGACCCCGTCTTCTAGGTGCTACACTGTTGCTACCAGATTCTTACCGTGTCTTTCAGTTGCCAACTGGCTCATACTGTACTTGAAAGTGAAGTTATCAAAACTTTATTATGACCCTTAATTTTCAAATATTCTGTATTGTTACTTAAAAAATAAATCTAATCGTCTCTGA

Function

NR:

description
glycogen phosphorylase, liver form-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962230.1 False 2512 mRNA 0.53 20 41636156 41663416
XM_036962229.1 True 3090 mRNA 0.52 20 41636159 41666062

Neighbor

gene id symbol gene type direction distance location
LOC110505965 trim9 coding upstream 13361 41547371 ~ 41622795 (+)
LOC110504259 LOC106603281 coding upstream 285407 41297432 ~ 41350749 (+)
si:ch211-132f19.7 LOC106611404 coding upstream 745044 40868101 ~ 40891112 (+)
dnajc27 LOC106611405 coding upstream 776102 40829046 ~ 40860054 (+)
pomca LOC100510783 coding upstream 813330 40819696 ~ 40822826 (+)
LOC110505960 LOC106611458 coding downstream 11282 41677344 ~ 41737128 (+)
LOC110505959 LOC106611457 coding downstream 74111 41740173 ~ 41757394 (+)
LOC110504274 LOC106611444 coding downstream 115209 41781271 ~ 41937779 (+)
LOC110498275 sos2 coding downstream 279437 41945499 ~ 42020153 (+)
LOC110505968 LOC106591812 coding downstream 388056 42054118 ~ 42059358 (+)
G1983533 NA non-coding upstream 8066 41626068 ~ 41628090 (+)
G1983569 NA non-coding upstream 34412 41601327 ~ 41601744 (+)
G1983565 NA non-coding upstream 44623 41591125 ~ 41591533 (+)
G1983554 NA non-coding upstream 77276 41557779 ~ 41558880 (+)
G1983543 NA non-coding upstream 109050 41526903 ~ 41527106 (+)
G1983612 NA non-coding downstream 64491 41730553 ~ 41778877 (+)
G1983630 NA non-coding downstream 88559 41754621 ~ 41755446 (+)
G1983614 NA non-coding downstream 92553 41758615 ~ 41759925 (+)
G1983663 NA non-coding downstream 181897 41847959 ~ 41848335 (+)
G1983673 NA non-coding downstream 197570 41863632 ~ 41917571 (+)
G1983499 NA other upstream 186816 41448402 ~ 41449340 (+)
G1983387 NA other upstream 419404 41215475 ~ 41216752 (+)
G1983277 NA other upstream 588254 41047551 ~ 41047902 (+)
G1982355 NA other upstream 1245749 40389658 ~ 40390407 (+)
G1983721 NA other downstream 396963 42063025 ~ 42103896 (+)
G1983777 NA other downstream 566178 42232240 ~ 42232904 (+)
G1983836 NA other downstream 596165 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 753098 42419107 ~ 42454007 (+)

Expression


Co-expression Network