Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504274 |
| gene name | LOC106611444 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 41781271 ~ 41937779 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962933.1 | False | 5697 | mRNA | 0.50 | 36 | 41781271 | 41937779 |
| XM_036962932.1 | False | 5779 | mRNA | 0.50 | 36 | 41781501 | 41937779 |
| XM_036962934.1 | False | 5742 | mRNA | 0.50 | 37 | 41781501 | 41937779 |
| XM_036962935.1 | False | 5776 | mRNA | 0.50 | 35 | 41781501 | 41937779 |
| XM_036962936.1 | False | 5640 | mRNA | 0.50 | 35 | 41781502 | 41937779 |
| XM_036962937.1 | False | 5637 | mRNA | 0.50 | 34 | 41781502 | 41937779 |
| XM_036962938.1 | False | 5135 | mRNA | 0.51 | 32 | 41814518 | 41937779 |
| TU2267811 | True | 1973 | lncRNA | 0.48 | 2 | 41935544 | 41937580 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505959 | LOC106611457 | coding | upstream | 23877 | 41740173 ~ 41757394 (+) |
| LOC110505960 | LOC106611458 | coding | upstream | 44143 | 41677344 ~ 41737128 (+) |
| LOC110505964 | LOC106611459 | coding | upstream | 115209 | 41636156 ~ 41666062 (+) |
| LOC110505965 | trim9 | coding | upstream | 158476 | 41547371 ~ 41622795 (+) |
| LOC110504259 | LOC106603281 | coding | upstream | 430522 | 41297432 ~ 41350749 (+) |
| LOC110498275 | sos2 | coding | downstream | 7720 | 41945499 ~ 42020153 (+) |
| LOC110505968 | LOC106591812 | coding | downstream | 116339 | 42054118 ~ 42059358 (+) |
| LOC110505969 | LOC106591813 | coding | downstream | 121916 | 42059695 ~ 42063783 (+) |
| LOC110505970 | LOC106611462 | coding | downstream | 142814 | 42080593 ~ 42092048 (+) |
| LOC110505971 | LOC106611464 | coding | downstream | 157298 | 42095077 ~ 42101228 (+) |
| G1983612 | NA | non-coding | upstream | 2394 | 41730553 ~ 41778877 (+) |
| G1983614 | NA | non-coding | upstream | 21346 | 41758615 ~ 41759925 (+) |
| G1983630 | NA | non-coding | upstream | 25825 | 41754621 ~ 41755446 (+) |
| G1983584 | NA | non-coding | upstream | 119565 | 41661201 ~ 41661706 (+) |
| G1983583 | NA | non-coding | upstream | 125534 | 41655249 ~ 41655737 (+) |
| G1983625 | NA | non-coding | downstream | 301 | 41938080 ~ 41938676 (+) |
| G1983704 | NA | non-coding | downstream | 1573 | 41939352 ~ 41939610 (+) |
| G1983706 | NA | non-coding | downstream | 4025 | 41941804 ~ 41942044 (+) |
| G1983708 | NA | non-coding | downstream | 4937 | 41942716 ~ 41943846 (+) |
| G1983709 | NA | non-coding | downstream | 6483 | 41944262 ~ 41944473 (+) |
| G1983499 | NA | other | upstream | 331931 | 41448402 ~ 41449340 (+) |
| G1983387 | NA | other | upstream | 564519 | 41215475 ~ 41216752 (+) |
| G1983277 | NA | other | upstream | 733369 | 41047551 ~ 41047902 (+) |
| G1983721 | NA | other | downstream | 125246 | 42063025 ~ 42103896 (+) |
| G1983777 | NA | other | downstream | 294461 | 42232240 ~ 42232904 (+) |
| G1983836 | NA | other | downstream | 324448 | 42262227 ~ 42262714 (+) |
| cn112 | cn112 | other | downstream | 481381 | 42419107 ~ 42454007 (+) |
| LOC110505989 | NA | other | downstream | 785196 | 42722700 ~ 42728639 (+) |
| G1983673 | NA | non-coding | upstream | 17973 | 41863632 ~ 41917571 (+) |
| G1983663 | NA | non-coding | upstream | 87209 | 41847959 ~ 41848335 (+) |
