cn112 (cn112)


Basic Information

Item Value
gene id cn112
gene name cn112
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42419107 ~ 42454007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962210.1
TATGGAACATCCGGGAATTATAGGGAGTAGGACTTACTCGTCAGTGCGTCCGACAGAATTCACCTTCCGCAGTGAACAACAAGTAACATGGGGTTGTAGCGTTATCTGGGTCGAATAATCATGTTGACCTTCAAAGCATTACAGAGGAACAAAACCCTTAAATATGGAGTTCCCATGTTGTTGCTGGTAGTGGGAGGTTCCTTTGGGCTCCGGGAGTTCACACAGATCCGCTACGATGCTCAGAAGATCATGAAGAAGctgGATCCCACCCTAGAGGCCAAGGTGAACCCCCAGAAACAGTCTGTTATCCTGGAGGAGGAGTACCAGAAGATGAAGGATATAAacctggaggagtggaggaacatCAGAGGTCCTCGTCCCTGGGAAGACTCCAAGGAATACCAAGAGCAGCAGCGCTCCAGACAGGGCAAGGCAGCGTGATGGAGATATGCCTCGGAATACCGCTGACCAGAGGCCCGTACGGTTTGCAACAGGATATACTGAGTGAGATGGGAAGACACAGGGCCAAGTTATCACCAAGGCCAATGGCTTGAGGAATGTAATATGTATTTATCGTCGTAACTCAAAGTAACGAAACCTTTGAGTCAATGAGAGTTTTGGAAATGGACAGTTGAATCTGTGATCCAATTGTATGTAAACAACAAATGTGCATGTCTTATATGTTATATAAAAAAATGTCATGTTTTGAAA
>NM_001165169.1
ACCTTCCGCAGTGAACAACAAGTAACATGGGGTTGTAGCGTTATCTGGGTCGAATAATCATGTTGACCTTCAAAGCATTACAGAGGAACAAAACCCTTAAATATGGAGTTCCCATGTTGctgGATCCCACCCTAGAGGCCAAGGTGAACCCCCAGAAACAGTCTGTTATCCTGGAGGAGGAGTACCAGAAGATGAAGGATATAAacctggaggagtggaggaacatCAGAGGTCCTCGTCCCTGGGAAGACTCCAAGGAATACCAAGAGCAGCAGCGCTCCAGACAGGGCAAGGCAGCGTGATGGAGATATGCCTCGGAATACCGCTGACCAGAGGCCCGTACGGTTTGCAACAGGATATACTGAGTGAGATGGGAAGACACAGGGCCAAGTTATCACCAAGGCCAATGGCTTGAGGAATGTAATATGTATTTATCGTCGTAACTCAAAGTAACGAAACCTTTGAGTCAATGAGAGTTTTGGAAATGGACAGTTGAATCTGTGATCCAATTGTATGTAAACAACAAATGTGCATGTCTTATATGTTATATAAAAAAATGTCATGTTT
>TU2268690
CAGAATTCACCTTCCGCAGTGAACAACAAGTAACATGGGGTTGTAGCGTTATCTGGGTCGAATAATCATGTTGACCTTCAAAGCATTACAGAGGAACAAAACCCTTAAATATGGAGTTCCCATGTTGctgGATCCCACCCTAGAGGCCAAGGTGAACCCCCAGAAACAGTCTGTTATCCTGGAGGAGGAGTACCAGAAGATGAAGGATATAAacctggaggagtggaggaacatCAGAGGTCCTCGTCCCTGGGAAGACTCCAAGGAATACCAAGAGCAGCAGCGCTCCAGACAGGGCAAGGCAGCGTGATGGAGATATGCCTCGGAATACCGCTGACCAGAGGCCCGTACGGTTTGCAACAGGATATACTGAGTGAGATGGGAAGACACAGGGCC

Function

NR:

description
CN112 protein

GO:

id name namespace
GO:0031966 mitochondrial membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962210.1 False 711 mRNA 0.46 4 42419107 42454007
NM_001165169.1 False 567 mRNA 0.45 3 42419168 42454002
TU2268690 True 396 TUCP 0.51 3 42419160 42453823

Neighbor

gene id symbol gene type direction distance location
LOC110504277 LOC105025529 coding upstream 1065 42284746 ~ 42418042 (+)
LOC110505975 dcaf5 coding upstream 149041 42237295 ~ 42270066 (+)
LOC110505972 pacs2 coding upstream 192434 42107551 ~ 42226673 (+)
LOC110505971 LOC106611464 coding upstream 317879 42095077 ~ 42101228 (+)
LOC110505970 LOC106611462 coding upstream 327059 42080593 ~ 42092048 (+)
LOC110506000 NA coding downstream 37966 42491973 ~ 42633124 (+)
LOC118944289 NA coding downstream 183755 42637762 ~ 42641624 (+)
LOC110505985 lgmn coding downstream 231025 42685032 ~ 42701955 (+)
LOC110505988 chp1 coding downstream 253657 42707664 ~ 42715733 (+)
LOC110505989 NA coding downstream 268693 42722700 ~ 42728639 (+)
G1984253 NA non-coding upstream 285 42418353 ~ 42418822 (+)
G1984304 NA non-coding upstream 2831 42415564 ~ 42416276 (+)
G1984292 NA non-coding upstream 45650 42372685 ~ 42373457 (+)
G1984284 NA non-coding upstream 68594 42350185 ~ 42350513 (+)
G1984269 NA non-coding upstream 101154 42317547 ~ 42317953 (+)
G1984317 NA non-coding downstream 13983 42467990 ~ 42469076 (+)
G1984488 NA non-coding downstream 173182 42627189 ~ 42628064 (+)
G1984489 NA non-coding downstream 187936 42641943 ~ 42642481 (+)
G1984492 NA non-coding downstream 192534 42646541 ~ 42694457 (+)
G1984507 NA non-coding downstream 228588 42682595 ~ 42683324 (+)
G1983836 NA other upstream 156393 42262227 ~ 42262714 (+)
G1983777 NA other upstream 186203 42232240 ~ 42232904 (+)
G1983721 NA other upstream 315211 42063025 ~ 42103896 (+)
LOC110505959 LOC106611457 other upstream 677508 41740173 ~ 41757394 (+)
G1983499 NA other upstream 969767 41448402 ~ 41449340 (+)
G1984581 NA other downstream 513409 42964604 ~ 42975274 (+)
G1984431 NA other downstream 588674 43042681 ~ 43043318 (+)
G1984764 NA other downstream 1017549 43471556 ~ 43472009 (+)
G1984797 NA other downstream 1120036 43574043 ~ 43574613 (+)

Expression


Co-expression Network