LOC110505989


Basic Information

Item Value
gene id LOC110505989
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42722700 ~ 42728639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039541.1
CTtctcaaagtcaagCTTTGAAGAATAGTCCTTGAAGGAGACAGCTCCTCTGTCCCAGAATGCACCGCGCAGTTCAGTGgagtttcccatctcctcaaaatTATCTCTGACGATGGGAGAGTTTTTTAAAAAATGGCGTCGAACGGTGGAGACCGTTGTGCTTGCAAAAAAATCCACGGGACTCGTACAACGACCGACGGACAACACCCGGGACATTAGCGTTTACTGATGATTTGTGGCGGCTTGGATGTCTTTCACTTCTAGACAAGATCTTCTCTGACAGTGCAACATCTGAACGTGTACATCATTTACATCAAGATGCAAACTAAATGAGTGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGCACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCGTGTGAGACAAGTCTGGATTTAGGCCACCATCACCCAACTGTCAAGCTCCACAGCTGTTGAAACCGGAGATGGATCAAAGTCTGTCATCATCAATGGATCAAGATATCAACCTCTGCCACTCTTCACTAAAGAAAGGACCGCTCCGGGGATGTGTGGGTTACAGGAGAGACTGGCTACCACACATACAGCCCCAGGCCgggtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagcTGTCCGTCTCCTCTCCTTATAGCCAATAATGATGATAACTGTAGATCAGGGCCCGTATCTACAAAGTGTCTCAAAGTAGGAGGGCTGATCTAGCATCAGTTTGACTTTTCAGTTTGATCATAATGAATCAATGTAtagacagatcctagatcagattGAATCAGATTGTATAGACaggtcctagatcagcattctTACTCTCCACCACTCCTTGTAGTTGGAACCCATTTCTTTCATAACTTGGGGGTCAAACAGGAATTGTGTAGTCTTACCGCCCAATTTGACCTCTACTCTTCTGTTGTCTGAACTGAGGCAATtcaccttttttttatttttataatcaATTTATCTAGGTATAGATCTAGATGTACTGGGATCAGTGGTTTGTTGTTTTTCCTGAATGCCCTTATCCCCAACCTTTTACAGATGTAGTTCAACTTTCAGTAGACATTGTAGCAAGGATCTGGTGTAGACCCCTGTAATCTCGCAGGCCAGACATTACAGCCACGCAGTAAAGTTTGATCTTTCAAGTATTATGCAATATT
>XR_002470920.2
TTCCAGAGCTATACAATATTACAAACAGCAAGACTAATTATCTCACATCTTGGAAAATATTTTGTGATGTACTTCTTGTTGACTAAATTTCTGTTAATGTTATGTTTTTGAGCTTTGAAGAATAGTCCTTGAAGGAGACAGCTCCTCTGTCCCAGAATGCACCGCGCAGTTCAGTGgagtttcccatctcctcaaaatTATCTCTGACGATGGGAGAGTTTTTTAAAAAATGGCGTCGAACGGTGGAGACCGTTGTGCTTGCAAAAAAATCCACGGGACTCGTACAACGACCGACGGACAACACCCGGGACATTAGCGTTTACTGATGATTTGTGGCGGCTTGGATGTCTTTCACTTCTAGACAAGATCTTCTCTGACAGTGCAACATCTGAACGTGTACATCATTTACATCAAGATGCAAACTAAATGAGTGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGCACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCGTGTGAGACAAGTCTGGATTTAGGCCACCATCACCCAACTGTCAAGCTCCACAGCTGTTGAAACCGGAGATGGATCAAAGTCTGTCATCATCAATGGATCAAGATATCAACCTCTGCCACTCTTCACTAAAGAAAGGACCGCTCCGGGGATGTGTGGGTTACAGGAGAGACTGGCTACCACACATACAGCCCCAGGCCgggtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagcTGTCCGTCTCCTCTCCTTATAGCCAATAATGATGATAACTGTAGATCAGGGCCCGTATCTACAAAGTGTCTCAAAGTAGGAGGGCTGATCTAGCATCAGTTTGACTTTTCAGTTTGATCATAATGAATCAATGTAtagacagatcctagatcagattGAATCAGATTGTATAGACaggtcctagatcagcattctTACTCTCCACCACTCCTTGTAGTTGGAACCCATTTCTTTCATAACTTGGGGGTCAAACAGGAATTGTGTAGTCTTACCGCCCAATTTGACCTCTACTCTTCTGTTGTCTGAACTGAGGCAATtcaccttttttttatttttataatcaATTTATCTAGGTATAGATCTAGATGTACTGGGATCAGTGGTTTGTTGTTTTTCCTGAATGCCCTTATCCCCAACCTTTTACAGATGTAGTTCAACTTTCAGTAGACATTGTAGCAAGGATCTGGTGTAGACCCCTGTAATCTCGCAGGCCAGACATTACAGCCACGCAGTAAAGTTTGATCTTTCAAGTATTATGCAATATT
>TU2268800
GTTTTTTAAAAAATGGCGTCGAACGGTGGAGACCGTTGTGCTTGCAAAAAAATCCACGGGACTCGTACAACGACCGACGGACAACACCCGGGACATTAGCGTTTACTGATGATTTGTGGCGGCTTGGATGTCTTTCACTTCTAGACAAGATCTTCTCTGACAGTGCAACATCTGAACGTGTACATCATTTACATCAAGATGCAAACTAAATGAGTGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGAACTGTCCTGTGGACCACAGGCCTCCCATGCCAGACTGCCAGGTGTGGGGGCACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCTGCGGACAACAGGTCTCCCATGCCAGACTGCCAGGTGTCGGGGAACTGTCCGTGTGAGACAAGTCTGGATTTAGGCCACCATCACCCAACTGTCAAGCTCCACAGCTGTTGAAACCGGAGATGGATCAAAGTCTGTCATCATCAATGGATCAAGATATCAACCTCTGCCACTCTTCACTAAAGAAAGGACCGCTCCGGGGATGTGTGGGTTACAGGAGAGACTGGCTACCACACATACAGCCCCAGGCCgggtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagctgtccgtctcctctctcctcacctagcTGTCCGTCTCCTCTCCTTATAGCCAATAATGATGATAAC
>TU2268812
AGGCAATtcaccttttttttatttttataatcaATTTATCTAGGTATAGATCTAGATGTACTGGGATCAGTGGTTTGTTGTTTTTCCTGAATGCCCTTATCCCCAACCTTTTACAGATGTAGTTCAACTTTCAGTAGACATTGTAGCAAGGATCTGGTGTAGACCCCTGTAATCTCGCAGGCCAGACATTACAGCCACGCAGTAAAGTTTGATCTTTCAAGTATTATGCAATATTCTGAGACACTCATCTGGCTCTGTGAGATTAGATTAGCAGCCACGTGATTGGCTGAAAAAGCTGGAAATATCTCTCTACCTCATTGACATGTTTGGCACCATGACAGTTGGTGCTTTTCGACACGATGAAAACGCTGTAGAGGCCAACATAACACTAGTCCCGGGTCCTACAGAGGGAGGTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039541.1 False 1626 mRNA 0.50 4 42722700 42728455
XR_002470920.2 False 1723 mRNA 0.48 3 42722758 42728455
TU2268800 False 1000 TUCP 0.55 3 42722975 42727949
TU2268812 True 419 lncRNA 0.41 1 42728221 42728639

Neighbor

gene id symbol gene type direction distance location
LOC110505988 chp1 coding upstream 6967 42707664 ~ 42715733 (+)
LOC110505985 lgmn coding upstream 20745 42685032 ~ 42701955 (+)
LOC118944289 NA coding upstream 81076 42637762 ~ 42641624 (+)
LOC110506000 NA coding upstream 89576 42491973 ~ 42633124 (+)
cn112 cn112 coding upstream 268693 42419107 ~ 42454007 (+)
LOC110505990 LOC106611473 coding downstream 10780 42739235 ~ 42747065 (+)
LOC110504284 LOC106611474 coding downstream 22054 42750509 ~ 42767350 (+)
golga5 golga5 coding downstream 39988 42768443 ~ 42789971 (+)
trip11 trip11 coding downstream 69026 42797481 ~ 42855269 (+)
LOC110504345 LOC106611472 coding downstream 140526 42868981 ~ 42888144 (+)
G1984414 NA non-coding upstream 2690 42717575 ~ 42720010 (+)
G1984492 NA non-coding upstream 28243 42646541 ~ 42694457 (+)
G1984507 NA non-coding upstream 39376 42682595 ~ 42683324 (+)
G1984489 NA non-coding upstream 80219 42641943 ~ 42642481 (+)
G1984488 NA non-coding upstream 94636 42627189 ~ 42628064 (+)
G1984416 NA non-coding downstream 411 42728866 ~ 42729389 (+)
G1984424 NA non-coding downstream 1031 42729486 ~ 42729832 (+)
G1984408 NA non-coding downstream 1269 42729724 ~ 42731100 (+)
G1984525 NA non-coding downstream 26872 42755327 ~ 42755672 (+)
G1984526 NA non-coding downstream 30355 42758810 ~ 42759175 (+)
G1983836 NA other upstream 459986 42262227 ~ 42262714 (+)
G1983777 NA other upstream 489796 42232240 ~ 42232904 (+)
G1983721 NA other upstream 618804 42063025 ~ 42103896 (+)
LOC110505959 LOC106611457 other upstream 981101 41740173 ~ 41757394 (+)
G1984581 NA other downstream 238961 42964604 ~ 42975274 (+)
G1984431 NA other downstream 314226 43042681 ~ 43043318 (+)
G1984764 NA other downstream 743101 43471556 ~ 43472009 (+)
G1984797 NA other downstream 845588 43574043 ~ 43574613 (+)
G1984803 NA other downstream 885093 43613548 ~ 43635501 (+)
LOC110505989 NA other upstream 272 42722700 ~ 42728639 (+)

Expression


Co-expression Network