LOC110505947 (LOC106591369)


Basic Information

Item Value
gene id LOC110505947
gene name LOC106591369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43376094 ~ 43395316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962272.1
AAGCGCCCCCTGGCGGAGAtggggctgagggagagagaagacataTCTGACTACTTCTAAGAAAAGATGAACAACTACCAGCTAAAACAATTTAAGTTTTTTTATACATGTAATACATTGGTTTATGTTTGAAACATCTGCTGTATCGGTCCACAAAGTCAGAGAAGAAAAGTAAACAGAGAAAGAATGCAGATTTTGTACGTGGCACGTTTACGTGGCGTGAACAATGAGCGTTACCCGGAACTGCTACATTTGGCAGAAACATTTCGAGCTAGATAGCTATAAAGAATAATAGCTAAGTGCAGTTAGTTTTGCTCAAAAAttattcaaaaataaataaaatagctaCATTGAAGAGTACGATATGGGCAATACACTTTCTAGAGATGACAACGTGTCAACTGTAGCCAACAATACTTTGTGAGGGAAGATAGTTAGCCTAGCAGGCTATCTAATTTTGCTAACGTTACAGTAGCTACTACTAGATGATGTTTAGATTTCTGCAAAAGTAAGAAGCAGATTAGCTAGATTGACATTAGATTGCATAAACAACCGTGTTCAATGTCGTAGTGGTTAAATCGTAGAGTTATTTAGCAGAACTGACCACATGGCTGTTTAGACCTCTGTGCAGATAGTTTTAGTTATCTATCATTGCTGCGAAGTCGATTCTTGTGATCAAtgattgacattttagtcatttaagtaTAAGAGCGACTTACAATTCATGAATTTGTTTTAAGATAGTTAGGTGAGACGACACATCACGTTAAATTTTCCCTCAACAAAGTATTTATCACCAAAGGCAGTGCTAGTGGGAAAAGAGAAGTACCATTTGATTTATAGTTATTTTTTATACTTGGCGTTATCTGTCTAGCAATCAAGTTTGCCAACCTATCCATCTAGTCAGTTTCTGGATTGAGACTAGTCTGTTTACCGCTCTAGCTACCACTTTCCAATAGTCAGGCTAATTGTTGCATAGCAAAGCACAGCTGCAATTATGTCTATGGACGACTTCACTTCGATCAGCCTGCTGTCCCTGGCCATGTTGGTGGGGTGTTATGTGTCTGGAACCATTCCTCTGGCTGTCAACTTCTCAGAGGAGAAGCTGAAGCTGGTGACGGTCCTGGGAGCAGGGCTGCTGTGTGGTACTGCCCTGGCTGTCATCATCCCCGAGGGGGTCCATGCCCTGTATGAGGAGGTCCTGGAGGgtgtgCACCACGCCCCTGGCCAggtggagggggtgggggtgtcTGAGCCCAAGGAAGGTGTGGATGCAGCTCTGGGGGTCAGTGGGGAGCACAGCCACAGCCACGAGCACCTCCATGCCTACATCGGGGTTTCTCTGGTCCTGGGGTTCGTTTTCATGCTGCTGGTCGACCAGATAGGAAGCGCCCACGTACACAGCAGTGCTGACGatcCAGAGTCTGCGAGGGTTGCCAGCTCAAAGATCACCACCACCTTGGGACTAGTGGTCCATGCAGCAGCTGACGGCGTGGCTCTCGGAGCAGCGGCTTCAACTTCCCAGACCAGTGTTCAGCTCATTGTCTTTGTGGCCATCATGCTTCACAAGGCCCCAGCAGCCTTTGGCCTGGTCTCTTTCCTGATGCATGCTGGTCTGGAGAGGAATCGGATCCGTAAACACCTGCTGGCCTTCGCCCTGGCAGCACCTGTCCTCGCCATGGTTACCTTCGTAGGACTCAGCCAGagcaGTAAAGAGGCACTGTCCAACGTGAACGCCACAGGCGTGGCCATGCTGTTCTCTGCCGGGACCTTCCTGTATGTTGCCACCGTACACGTTCTGCCTGAGGTGGGCGGGACCGGACACAGCCACTCCCCCACACCGGGGAAGGAAGCAGCGAAGGGACTGAGCAAGGtggaggttggggctctggttcTGGGCTGTCTGCTACCGCTGGTGCTGTCTGTGGGACACCACCACTAGACACACACCGCTAGTAGACACaaaggagaccgaggggaggagaggaaaggagggatgtAGTAATGAGAGGAAGAGTGGGTTTAGAGGGAAAGCAGCCTAACGGACATCTCTATCACACATCTCAAATGTCTTATGTACCTGTTCTGTTGATGGACTTCTGATTTGGTTGGATTGCGGTTGTTGTGTCCTCGTTGCCGGGACAACGACCTGCGGGTGGAATCGGAACCGCGCTGGACAACACAaagggatgatgatgatgtcataacCATAGTAATAAGGACCTCCCACTTGTTCAACACTCTAAAGGAAGTGCTATCTGCTGATACTGATGACACAAGACTGCTACCATGGTTTCTGCTTCTTTTAAGCAGacatttatttttctattttggggggggggggggggggggtctctctaGGTAGGCTTTACATGAACTCATGTTAATGTACCTGCTTTTGTTCTGTTGCTGAGGACTGGGCTGTGAGAAATGAAGGGATAGTTGTGACATCTTGCAGTAAAAGTAAAGGTTTTAAATCAAGAGTGATTTTTCACTCTCACTTTTCAGAGCATTGTTTATGTGCTACGATGAGCTTGCACTCTGACACACGGTGTTCTTACTGTGAGATTAAATGTAGTCTATATTCAAATTCTTGCTAGTGCAATCAGTAACTAATTAGAAGTTTACATGTGAGTAGTTGCACTTCTATGACTTGTGGCCTGATCTATAGGCTATTTATTTATCTACCGTACTGTTAAAGGACATTGGACATTTGAGAGACATGTTGtctataagactgctgtccacAGACTCTAGCAAACCTGTTAACTGAGGCTTATTAAAGGGGAAATCCGCAGTTCAAACGATAACCAAAGGAATCCCCGCCACCTTGTTGGGTAAACAGCTTGAAGGATGACTGTCTTGCTTCAGACTCACAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCCTGGTCCCAGGATCAGCCTCTAAATTATACACTGTAAtggaagccccaggaccagcctctaAATTATACACCATAAtggaagccccaggaccagcctctaAATTATACACCATAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGATCAGCCTCTAAATTATACACTGTAAtggaagccccaggaccagcctctaAATTATACACCATAAtggaagccccaggaccagcctctaAATTATACACCATAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCAGTCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAAtggaagccccaggaccagcctctaAATTATACACCGTAAtggaagccccaggaccagcgtCTAAATTATACACCGTAATGGAAGCCctggccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACTAGCCTCTAAATTATACACCGTAATGGAAGCCctggccccaggaccagcctctaAATTATACACTGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACGTAAtggaagccccaggaccagcctctaAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCATGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagtctctAAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATCATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACTAGCCTCTAAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATCATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGCCCCCAGGACCAGCCTCTAAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACTAGCCTCTAAATTATACACCGTAATGGAAGCCctggccccaggaccagcctctaAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCATCCTCTAAATTATACACCGTAAtggaagccccaggaccagcctctaAATTATACACCGTAATGGAAGCCCCAGGACCATCCTCTAAATTATACACCGTAATGGAAGCCCTGGTCCCAGGACTAGCCTCTAAATTATACACCGTAATGGAAGCCctggccccaggaccagcctctaAATTATACACTGTAATGGAAGCCCTGGTCCCAGGACCAGCCTCTATGCACCATAAAATCTAAACTTATATCAACCCATGAATTACCCTGCTTTCTTTTACGTTTGGTTTCAAATGTGGTTCTCTTCAGACCTGTTTTCCTGAGTGATTGCAGGATAGCTACTGGTCTACTTGATGGCAAGTAGACTGGGTACTGGTCTACCTGATGACAAGTAGACTGGCGACTGGTCTATTTGATGGTGGTAGACTGGGGACTGGTCTACCTGATGACAAGTAGACTGGGTACTGGTCTATTTAATGCTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTAATGGTGGTAGACTGGTACTGGTCTATTTAATGGTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTGATGgtggtagactgggtactggtCTATTTGATGGTGGTAGACTAGTACTGGTCTATTTAATGgtggtagactgggtactggtCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTAATGGTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTAATGGTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGTACTGGTCTATTTGATGGTGGTAGACTGGGTGATTTTAGGGTACATGACATTAGGCATTGTTCCGTGAGTAGTCAGACCAATAGATGCATTATAATGAACTCTGAACTGAGGGACCAGTAATATGGAGTGTAGACCAACAGACAGTCGCCGGTAGATGTTCAGACTGATGGCTTTGTCTGGATCACCTCGTGTCTGTCTGTGAAGAGGGACTTAGTTATTTGCATTTGGGTCAAACAAAACAGCAGTTGTGACGTAATGACtttagatttatttttttattttttttctgattTGCTTTTAATTTATCTTCTGTCCTTATCAATGTTATAAAATCTCAGCAATAAGCATGTTAATTTTGTGAGCTCTGGTGTCCGTGTCTACCCACACAGAgttatccattatattgaccaggtgGTTGAGTGGTCATCTCTAACAATTGAAAGAGATGCCACTCAATGCCcctattcgatcaaataaaccACACGTAGAAAATAA

Function

NR:

description
PREDICTED: zinc transporter ZIP9-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14715 SLC39A9, ZIP9; solute carrier family 39 (zinc transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962272.1 True 6284 mRNA 0.47 7 43376094 43395316

Neighbor

gene id symbol gene type direction distance location
LOC110506001 rbm25 coding upstream 223529 43110612 ~ 43152565 (+)
vti1b vti1b coding upstream 302165 43060008 ~ 43073929 (+)
zfyve26 LOC106611478 coding upstream 336907 42918937 ~ 43039187 (+)
LOC110504345 LOC106611472 coding upstream 487950 42868981 ~ 42888144 (+)
trip11 trip11 coding upstream 520825 42797481 ~ 42855269 (+)
plekhd1 plekhd1 coding downstream 15639 43410955 ~ 43436311 (+)
LOC118944278 LOC106591229 coding downstream 74379 43469695 ~ 43470614 (+)
LOC118944350 NA coding downstream 320798 43716114 ~ 43716793 (+)
LOC118944157 LOC106591229 coding downstream 351329 43746645 ~ 43747748 (+)
LOC118944159 LOC106591229 coding downstream 370956 43766272 ~ 43767362 (+)
G1984682 NA non-coding upstream 31225 43334273 ~ 43344869 (+)
G1984666 NA non-coding upstream 63083 43312632 ~ 43313011 (+)
G1984650 NA non-coding upstream 70216 43297643 ~ 43305878 (+)
G1984654 NA non-coding upstream 81708 43259810 ~ 43294386 (+)
G1984651 NA non-coding upstream 101676 43247347 ~ 43274418 (+)
G1984724 NA non-coding downstream 6769 43402085 ~ 43408977 (+)
G1984733 NA non-coding downstream 26671 43421987 ~ 43429153 (+)
G1984710 NA non-coding downstream 42861 43438177 ~ 43438844 (+)
G1984741 NA non-coding downstream 46780 43442096 ~ 43442927 (+)
G1984745 NA non-coding downstream 56415 43451731 ~ 43451972 (+)
G1984431 NA other upstream 332776 43042681 ~ 43043318 (+)
G1984581 NA other upstream 400820 42964604 ~ 42975274 (+)
LOC110505989 NA other upstream 648145 42722700 ~ 42728639 (+)
cn112 cn112 other upstream 922271 42419107 ~ 42454007 (+)
G1983836 NA other upstream 1113380 42262227 ~ 42262714 (+)
G1984764 NA other downstream 76240 43471556 ~ 43472009 (+)
G1984797 NA other downstream 178727 43574043 ~ 43574613 (+)
G1984803 NA other downstream 218232 43613548 ~ 43635501 (+)
G1984807 NA other downstream 232676 43627992 ~ 43628808 (+)
G1984810 LOC106591229 other downstream 238516 43633832 ~ 43634426 (+)

Expression


Co-expression Network