plekhd1 (plekhd1)


Basic Information

Item Value
gene id plekhd1
gene name plekhd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43410955 ~ 43436311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585425.2
tcttcatcctctctgcccctcctctctgtccagtAGTCTGCCTCCAGCTGATGCTGATGTATTGGCAGCTTGATCATTCCACCCCGCTGAGTTTGGTATCAGGATGTGTGTGTTActttgtctgtgagtgtgtgtcgtgtccacaactgtgtgtgtgtgtgtgtacttcctagttcctcatttctatttttgttccattGATATTTTGTCCAACTCCACGCCCCTCTGTGGAAGGGTTAGGAGGGTTAGCGATGTTCTCCTCGTCCTCCaaaccctctctcttctcctactgGACGTCCATGGATCAGACAGACTCTGAAGTGCTGGACATTAGCACCAAGGTGCAGCTGCATGGGGTGCTCTGGAAGAGGCCCTTCGGACGGTCCTCCGCCAAGTGGTCCCGCAGATTCTTCATCATCAAAGACAGTTTCCTGCTCTACTATGCGGAGAATGAGAAGAGAAGCTTTGAGACCAACAAACACTTCAACATCCACCCCAAGGGTGTGATCCCCTTAGGAGGCTGTGTTGTGGATCCGAAGGAAGACCAGGGCATGCCATTCGCCATGGTTATAAATCATGACGACTTCACTGGTAACATTGTCCTGGCTGCAGAGAATGAGGCAGAACAAAACCAGTGGCTGGAGATGCTGCAGGAGTCTGGCAGAGTCACCTGGAAGAACGCCCAACTGGGAGAAGCCATGATAGAGAGCCTGGAAGCCCAGGGACTGCAGCTGGCCAAGGAGAAGCAAGAGTACCTGGATAAGCTGATGGAGGAGACAGAAGAACTGAGCCTGCAGCGAGAACAGAAGGAGCATCTGGAACGTCTGAACCTGGTTctggaggaggagaagcagaAGTTTGAGGAGCTGGTGACGGAGCTTAGAGCAGAGCAGGATCAGATCAAACTGGACTTGGACGGCACAGCACAGTCTCTGAAAGGTGTGGAGTCTGAAAAAGAGGAGCTGAACAGTTTGACAACACTTCTTCAGAAATCTATTGAGGAGCTGTCCCATGAGAAGCAGCGAACCCTGGAGTTGTTGAGGGAGAAGGAGCTTGAGCAGGCGGCTGAGCATCCAGAGAAGGACGAGGAGCAGGAGGTGCAGCCTGGTGACACGGGACTGCGATCGGAGCTGAGACACATTGAAGAGCAGATGAGggaactgcagagagagaaggagcaggctgaggagagGCAAACGGAGAATGAGCAGCGTGCCACAGTTCTGCAACAGGAAAGAGAGTTCTACTCCTGTCAGTCCAGGACTCTACAGCAGTCCCTCACACAGCTCACTGTGGACAAGAAGCAAACTGAGGTGGAACTCAAGGTGGAGATTGAGTCTCGTATGGAGCTGGAGCGGAGGCTGAAGCAGGCTGAGGAGGCTCTACGGAACCTGGAGAAAGGTCTGAGCTCTCTGGAACGCTCCAAAGAGAAGGATGACAAGATGAAGGGAGACGTCAACAACCTCAGGAAGTTCTTTGAGGAGTGTATCTGTGCTGCAGAGATCGAGGCCAAGCTCCCTTCTATAATGAAGAATGCTGTGTATCTCCACAAGGCTACAGCACGACGCATTAAGAGCTGTCGGATCCAGAGACGGGCCTCCAAACACCACTGGTTGAAACACTCCCAGTCATTCGTGGTTGCCCGTGGCGACGGCGGCAGCATGGAGGACCTGAGGGAGACTGCCCGGCGACTGACCTCCGACAGCTGCTTCAGGAAGAGCGTCTACAAGATCATCACACGCCACGACCAGGAGGCCTCCGCCAAGAAAGATGACTGACAGAGATAGGGAGGGATGGATTGCgggactgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgagagagagagactgattccTCAATGTAATAGTGTCAAGTCCTGTCGTCTGCTCCCACGGTGTTGTAGCTGGTTCGGGATTATCTTTAGGATGTCATCTCTTCAATATGATGTCATCTCTTCAACATGATGTCATCTCTTCAACATGATGTCATCTCTTCAATATGATGTCATCTCTTCAACAGCCTGGTTGTGTTCAAACTGCATTACAAGACTTTTATGCAAAATAGTTTTATTCAAACAAAATTAATGTTTATTGTTAAAGATATAGCAGCTCTCTTTACTGTCCTACAGCTTGGAGGACGGTCAGAAAAATAATGCATATAGTTATTGAACCAACACGATATGACAATGTGATggtttacagtacagtacaggcagAAGCCTTAAACCTGACCCTGGGTAACACCATCAATCAACCATATGGtcgacacacacactgcaagtcgacacacacacacactgcaggtcgacacacacacacacactgcaggtcgacacacacactgcaagtcgacacacacacacaca
>XM_021585426.2
caaacttttcaacggcgatcccgacgacacactgagcATTCTTCATCATCAAAGACAGTTTCCTGCTCTACTATGCGGAGAATGAGAAGAGAAGCTTTGAGACCAACAAACACTTCAACATCCACCCCAAGGGTGTGATCCCCTTAGGAGGCTGTGTTGTGGATCCGAAGGAAGACCAGGGCATGCCATTCGCCATGGTTATAAATCATGACGACTTCACTGGTAACATTGTCCTGGCTGCAGAGAATGAGGCAGAACAAAACCAGTGGCTGGAGATGCTGCAGGAGTCTGGCAGAGTCACCTGGAAGAACGCCCAACTGGGAGAAGCCATGATAGAGAGCCTGGAAGCCCAGGGACTGCAGCTGGCCAAGGAGAAGCAAGAGTACCTGGATAAGCTGATGGAGGAGACAGAAGAACTGAGCCTGCAGCGAGAACAGAAGGAGCATCTGGAACGTCTGAACCTGGTTctggaggaggagaagcagaAGTTTGAGGAGCTGGTGACGGAGCTTAGAGCAGAGCAGGATCAGATCAAACTGGACTTGGACGGCACAGCACAGTCTCTGAAAGGTGTGGAGTCTGAAAAAGAGGAGCTGAACAGTTTGACAACACTTCTTCAGAAATCTATTGAGGAGCTGTCCCATGAGAAGCAGCGAACCCTGGAGTTGTTGAGGGAGAAGGAGCTTGAGCAGGCGGCTGAGCATCCAGAGAAGGACGAGGAGCAGGAGGTGCAGCCTGGTGACACGGGACTGCGATCGGAGCTGAGACACATTGAAGAGCAGATGAGggaactgcagagagagaaggagcaggctgaggagagGCAAACGGAGAATGAGCAGCGTGCCACAGTTCTGCAACAGGAAAGAGAGTTCTACTCCTGTCAGTCCAGGACTCTACAGCAGTCCCTCACACAGCTCACTGTGGACAAGAAGCAAACTGAGGTGGAACTCAAGGTGGAGATTGAGTCTCGTATGGAGCTGGAGCGGAGGCTGAAGCAGGCTGAGGAGGCTCTACGGAACCTGGAGAAAGGTCTGAGCTCTCTGGAACGCTCCAAAGAGAAGGATGACAAGATGAAGGGAGACGTCAACAACCTCAGGAAGTTCTTTGAGGAGTGTATCTGTGCTGCAGAGATCGAGGCCAAGCTCCCTTCTATAATGAAGAATGCTGTGTATCTCCACAAGGCTACAGCACGACGCATTAAGAGCTGTCGGATCCAGAGACGGGCCTCCAAACACCACTGGTTGAAACACTCCCAGTCATTCGTGGTTGCCCGTGGCGACGGCGGCAGCATGGAGGACCTGAGGGAGACTGCCCGGCGACTGACCTCCGACAGCTGCTTCAGGAAGAGCGTCTACAAGATCATCACACGCCACGACCAGGAGGCCTCCGCCAAGAAAGATGACTGACAGAGATAGGGAGGGATGGATTGCgggactgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgagagagagagactgattccTCAATGTAATAGTGTCAAGTCCTGTCGTCTGCTCCCACGGTGTTGTAGCTGGTTCGGGATTATCTTTAGGATGTCATCTCTTCAATATGATGTCATCTCTTCAACATGATGTCATCTCTTCAACATGATGTCATCTCTTCAATATGATGTCATCTCTTCAACAGCCTGGTTGTGTTCAAACTGCATTACAAGACTTTTATGCAAAATAGTTTTATTCAAACAAAATTAATGTTTATTGTTAAAGATATAGCAGCTCTCTTTACTGTCCTACAGCTTGGAGGACGGTCAGAAAAATAATGCATATAGTTATTGAACCAACACGATATGACAATGTGATggtttacagtacagtacaggcagAAGCCTTAAACCTGACCCTGGGTAACACCATCAATCAACCATATGGtcgacacacacactgcaagtcgacacacacacacactgcaggtcgacacacacacacacactgcaggtcgacacacacactgcaagtcgacacacacacacaca

Function

symbol description
plekhd1 Orthologous to human PLEKHD1 (pleckstrin homology and coiled-coil domain containing D1).

NR:

description
pleckstrin homology domain-containing family D member 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585425.2 False 2386 mRNA 0.50 12 43410955 43436311
XM_021585426.2 True 2017 mRNA 0.50 12 43421717 43436311

Neighbor

gene id symbol gene type direction distance location
LOC110505947 LOC106591369 coding upstream 15639 43376094 ~ 43395316 (+)
LOC110506001 rbm25 coding upstream 258390 43110612 ~ 43152565 (+)
vti1b vti1b coding upstream 337026 43060008 ~ 43073929 (+)
zfyve26 LOC106611478 coding upstream 371768 42918937 ~ 43039187 (+)
LOC110504345 LOC106611472 coding upstream 522811 42868981 ~ 42888144 (+)
LOC118944278 LOC106591229 coding downstream 33384 43469695 ~ 43470614 (+)
LOC118944350 NA coding downstream 279803 43716114 ~ 43716793 (+)
LOC118944157 LOC106591229 coding downstream 310334 43746645 ~ 43747748 (+)
LOC118944159 LOC106591229 coding downstream 329961 43766272 ~ 43767362 (+)
LOC118944282 LOC106591229 coding downstream 360517 43725448 ~ 43797824 (+)
G1984724 NA non-coding upstream 1978 43402085 ~ 43408977 (+)
G1984719 NA non-coding upstream 22425 43386636 ~ 43388530 (+)
G1984682 NA non-coding upstream 66086 43334273 ~ 43344869 (+)
G1984666 NA non-coding upstream 97944 43312632 ~ 43313011 (+)
G1984650 NA non-coding upstream 105077 43297643 ~ 43305878 (+)
G1984710 NA non-coding downstream 1866 43438177 ~ 43438844 (+)
G1984741 NA non-coding downstream 5785 43442096 ~ 43442927 (+)
G1984745 NA non-coding downstream 15420 43451731 ~ 43451972 (+)
G1984714 NA non-coding downstream 27210 43463521 ~ 43464116 (+)
G1984761 NA non-coding downstream 31323 43467634 ~ 43468046 (+)
G1984431 NA other upstream 367637 43042681 ~ 43043318 (+)
G1984581 NA other upstream 435681 42964604 ~ 42975274 (+)
LOC110505989 NA other upstream 683006 42722700 ~ 42728639 (+)
cn112 cn112 other upstream 957132 42419107 ~ 42454007 (+)
G1983836 NA other upstream 1148241 42262227 ~ 42262714 (+)
G1984764 NA other downstream 35245 43471556 ~ 43472009 (+)
G1984797 NA other downstream 137732 43574043 ~ 43574613 (+)
G1984803 NA other downstream 177237 43613548 ~ 43635501 (+)
G1984807 NA other downstream 191681 43627992 ~ 43628808 (+)
G1984810 LOC106591229 other downstream 197521 43633832 ~ 43634426 (+)

Expression


Co-expression Network