LOC118944278 (LOC106591229)


Basic Information

Item Value
gene id LOC118944278
gene name LOC106591229
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43469695 ~ 43470614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962745.1
atgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgtctgatgggttCATTGTCATGATCATGTAATCAGtcatgttcacagtgaggtcctATGAGCAAGCTTTACAGTACAGGCTTCCTGACACTCCCTCTAACACTGTCACTATCAACCACCCTGAAGGAAACATGCTACTACAACAGCCAATCTCCTTTCACCTCAGAGCTTCACCCAGGAGACACTCATATCACATAATCATCGTCTTCCTCAGCATATTCATCATCTTCATCGTTATCTTTTTCTTCATCATGATGTTCAGAGTTCTGATTCACCTGGCAGCTCTACCACTCTGGGTGACAGggcAGTTGTTTAGTAGCATGGTTCATCAGAGGCCTGTGGCACTAACAGAAGGTCCTGGAGGAGACGTTCAACTCACCTGCAGCCATACGATCCCTAACTACTACGTGATACTATGGTACAAACAGTCAGCAGGAGACACTGCTATGAAACTCATTGGATATGCAAATTACAAGTCAATAACCATGGAGAAATCATTTGAAAAGCACTTCAATGTGAGTGGAGACGGTGGGAAAGAGGCTTATCTTCATCTAATGAGTCTGAGAGGACCTGAACACAGTGCAGTTTATTACTGTGCAGCCAGCCAACACAGTGATGTAGActtcctcctgttctcttctAAAACCCTGTCTGATGGTAATATTAGACCACGGCTCAGAACACCTGCATCTGAGGTTTGA

Function

NR:

description
uncharacterized protein LOC110504270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962745.1 True 757 mRNA 0.45 2 43469695 43470614

Neighbor

gene id symbol gene type direction distance location
plekhd1 plekhd1 coding upstream 33384 43410955 ~ 43436311 (+)
LOC110505947 LOC106591369 coding upstream 74379 43376094 ~ 43395316 (+)
LOC110506001 rbm25 coding upstream 317130 43110612 ~ 43152565 (+)
vti1b vti1b coding upstream 395766 43060008 ~ 43073929 (+)
zfyve26 LOC106611478 coding upstream 430508 42918937 ~ 43039187 (+)
LOC118944350 NA coding downstream 245500 43716114 ~ 43716793 (+)
LOC118944157 LOC106591229 coding downstream 276031 43746645 ~ 43747748 (+)
LOC118944159 LOC106591229 coding downstream 295658 43766272 ~ 43767362 (+)
LOC118944282 LOC106591229 coding downstream 326214 43725448 ~ 43797824 (+)
LOC118944162 LOC106591229 coding downstream 424380 43894994 ~ 43895838 (+)
G1984761 NA non-coding upstream 1649 43467634 ~ 43468046 (+)
G1984714 NA non-coding upstream 5579 43463521 ~ 43464116 (+)
G1984745 NA non-coding upstream 17723 43451731 ~ 43451972 (+)
G1984741 NA non-coding upstream 26768 43442096 ~ 43442927 (+)
G1984710 NA non-coding upstream 30851 43438177 ~ 43438844 (+)
G1984765 NA non-coding downstream 12277 43482891 ~ 43483377 (+)
G1984770 NA non-coding downstream 19813 43490427 ~ 43490746 (+)
G1984773 NA non-coding downstream 29334 43499948 ~ 43500702 (+)
G1984778 NA non-coding downstream 38989 43509603 ~ 43510393 (+)
G1984795 NA non-coding downstream 92300 43562914 ~ 43563235 (+)
G1984431 NA other upstream 426377 43042681 ~ 43043318 (+)
G1984581 NA other upstream 494421 42964604 ~ 42975274 (+)
LOC110505989 NA other upstream 741746 42722700 ~ 42728639 (+)
cn112 cn112 other upstream 1015872 42419107 ~ 42454007 (+)
G1983836 NA other upstream 1206981 42262227 ~ 42262714 (+)
G1984764 NA other downstream 942 43471556 ~ 43472009 (+)
G1984797 NA other downstream 103429 43574043 ~ 43574613 (+)
G1984803 NA other downstream 142934 43613548 ~ 43635501 (+)
G1984807 NA other downstream 157378 43627992 ~ 43628808 (+)
G1984810 LOC106591229 other downstream 163218 43633832 ~ 43634426 (+)

Expression


Co-expression Network