LOC118944350


Basic Information

Item Value
gene id LOC118944350
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43716114 ~ 43716793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039591.1
AGCTGATGGTCTCATCAtggactgtagggggacctctaactttaataatgtgaatgtctctacagtctgaaccactaaTTAGCATGATGTATTCAGATCATCAGTCCCTCCCACTTCACTGACATGTTGAATATGGTGGAACCTGCCGTGGTCTACTGATTGTCATCTATTCATCTATGTGACACTCCTCTTGTTTTATATACATTGATACCAGACTCTTTCCAGCACTCTCACATATAACGTGATCAAACATGTTCACATTTCTCTTCTCTGTTACTGTCTCACTGCTCTGTGCTGCAGGTCTTGTTGAGGGGAGTGAAGTCAATCAGACACCCACCATACTCTGGGGACCGAAAGACAGTGATGCTCAGATTAATTGCAGTCACACTAAGGGAGCTACCTACAACCAGATGTACTGGTACAGACAGCTTCCAGGAGAGGGAATGAAGCAGGTAGTTTACACAAGTAGTTACAGCGATCCAGAATATGGAGACTTCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039591.1 True 498 mRNA 0.44 2 43716114 43716793

Neighbor

gene id symbol gene type direction distance location
LOC118944278 LOC106591229 coding upstream 245500 43469695 ~ 43470614 (+)
plekhd1 plekhd1 coding upstream 279803 43410955 ~ 43436311 (+)
LOC110505947 LOC106591369 coding upstream 320798 43376094 ~ 43395316 (+)
LOC110506001 rbm25 coding upstream 563549 43110612 ~ 43152565 (+)
vti1b vti1b coding upstream 642185 43060008 ~ 43073929 (+)
LOC118944157 LOC106591229 coding downstream 29852 43746645 ~ 43747748 (+)
LOC118944159 LOC106591229 coding downstream 49479 43766272 ~ 43767362 (+)
LOC118944282 LOC106591229 coding downstream 80035 43725448 ~ 43797824 (+)
LOC118944162 LOC106591229 coding downstream 178201 43894994 ~ 43895838 (+)
LOC118944163 NA coding downstream 212000 43928793 ~ 43929323 (+)
G1984801 NA non-coding upstream 107719 43607429 ~ 43608395 (+)
G1984799 NA non-coding upstream 134447 43581320 ~ 43581667 (+)
G1984795 NA non-coding upstream 152879 43562914 ~ 43563235 (+)
G1984778 NA non-coding upstream 205721 43509603 ~ 43510393 (+)
G1984773 NA non-coding upstream 215412 43499948 ~ 43500702 (+)
G1984873 NA non-coding downstream 162347 43879140 ~ 43879515 (+)
LOC110505949 NA non-coding downstream 258169 43966017 ~ 43985188 (+)
G1984895 NA non-coding downstream 269391 43986184 ~ 43986397 (+)
G1984897 NA non-coding downstream 272684 43989477 ~ 43989681 (+)
G1984821 NA other upstream 43834 43657810 ~ 43672280 (+)
G1984803 NA other upstream 80613 43613548 ~ 43635501 (+)
G1984810 LOC106591229 other upstream 81688 43633832 ~ 43634426 (+)
G1984807 NA other upstream 87306 43627992 ~ 43628808 (+)
G1984797 NA other upstream 141501 43574043 ~ 43574613 (+)
G1984843 NA other downstream 31373 43748166 ~ 43748632 (+)
G1984830 NA other downstream 35384 43752177 ~ 43758854 (+)
G1984775 NA other downstream 54362 43771155 ~ 43771748 (+)
G1984853 NA other downstream 81546 43798339 ~ 43798806 (+)
G1984860 NA other downstream 100556 43817349 ~ 43817758 (+)

Expression


Co-expression Network