LOC118944157 (LOC106591229)


Basic Information

Item Value
gene id LOC118944157
gene name LOC106591229
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43746645 ~ 43747748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962332.1
tcatcacatactgtagggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagctcttctaatgtctgatgggttCATTGTCATGATCATGTAATCAGTCATGTTCACAGTGAGAACCTATGAGCAGGCTTTACAGTACAGGCTTCCTGACACTCCCTCTAACACTGTCACTATCCACCACCCTGAAGGAAACATGCTACTACAACAGCCAATCTCCTTTCACCTCAGAGCTTCACCCAGGAGACACTCATAtcacctcctcatcatcatcgtcTTCCTCAGCAtattcatcatcttcatcattatcTTTTTCTTCATCATGATGTTCAGAGTTCTGATTCACCTGGCAGCTCTACCACTCTGGGTGACAGGGCAGTTGTTTAGTAGCATGGTTCATCAGAGGCCTGTGGCACTAACAGAAGGTCCTGGAGGAGACGTTCAACTCACCTGCAGCCATACGATCCCTAACTACTACGTGATACTATGGTACAAACAGTCAGCAGGAGACACTGCTATGAAACTTATTGGTTATGCATATACCAAGTCAATAACCATGGAGAAATCATTTGAAAAGCACTTCAATGTGAGTGGAGATGGTGGGGAAGAGGCTAATCTTCATCTAGTGAGTCTGAGAGGACCTGAACACAGTGCAGTTTATTACTGTGCAGCCAGCCAACACAGTGATGTAGActtcctcctgttctctactAAAACCCTGTCTGATGGTAATATTAGACCACGGCTCAGAACACCTGCATCTGAGGTTTGACTTTGACTCAGTGCCAATGAATAAACACAGATGGATGATGGCATAAGGTGATATCTGTCCTGGTACAGTATACCAGTATTTACAGTTT

Function

NR:

description
uncharacterized protein LOC110504270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962332.1 True 893 mRNA 0.44 2 43746645 43747748

Neighbor

gene id symbol gene type direction distance location
LOC118944350 NA coding upstream 29852 43716114 ~ 43716793 (+)
LOC118944278 LOC106591229 coding upstream 276031 43469695 ~ 43470614 (+)
plekhd1 plekhd1 coding upstream 310334 43410955 ~ 43436311 (+)
LOC110505947 LOC106591369 coding upstream 351329 43376094 ~ 43395316 (+)
LOC110506001 rbm25 coding upstream 594080 43110612 ~ 43152565 (+)
LOC118944159 LOC106591229 coding downstream 18524 43766272 ~ 43767362 (+)
LOC118944282 LOC106591229 coding downstream 49080 43725448 ~ 43797824 (+)
LOC118944162 LOC106591229 coding downstream 147246 43894994 ~ 43895838 (+)
LOC118944163 NA coding downstream 181045 43928793 ~ 43929323 (+)
LOC110505949 NA coding downstream 218269 43966017 ~ 43985188 (+)
G1984801 NA non-coding upstream 138250 43607429 ~ 43608395 (+)
G1984799 NA non-coding upstream 164978 43581320 ~ 43581667 (+)
G1984795 NA non-coding upstream 183410 43562914 ~ 43563235 (+)
G1984778 NA non-coding upstream 236252 43509603 ~ 43510393 (+)
G1984773 NA non-coding upstream 245943 43499948 ~ 43500702 (+)
G1984873 NA non-coding downstream 131392 43879140 ~ 43879515 (+)
G1984895 NA non-coding downstream 238436 43986184 ~ 43986397 (+)
G1984897 NA non-coding downstream 241729 43989477 ~ 43989681 (+)
G1984899 NA non-coding downstream 243495 43991243 ~ 43991712 (+)
G1984821 NA other upstream 74365 43657810 ~ 43672280 (+)
G1984803 NA other upstream 111144 43613548 ~ 43635501 (+)
G1984810 LOC106591229 other upstream 112219 43633832 ~ 43634426 (+)
G1984807 NA other upstream 117837 43627992 ~ 43628808 (+)
G1984797 NA other upstream 172032 43574043 ~ 43574613 (+)
G1984843 NA other downstream 418 43748166 ~ 43748632 (+)
G1984830 NA other downstream 4429 43752177 ~ 43758854 (+)
G1984775 NA other downstream 23407 43771155 ~ 43771748 (+)
G1984853 NA other downstream 50591 43798339 ~ 43798806 (+)
G1984860 NA other downstream 69601 43817349 ~ 43817758 (+)

Expression


Co-expression Network