LOC118944159 (LOC106591229)


Basic Information

Item Value
gene id LOC118944159
gene name LOC106591229
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43766272 ~ 43767362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962333.1
ctctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgccTGATGGGTTCATTGTCATGATCATGTAATCAGtcatgttcacagtgaggtcctATGAGCAAGCTTTACAGTACAGGCTTCCTGACACTCCCTCTAACACTGTCACTATCCACCACCCTGAAGGAAACATGCTACTACAACAGCCAATCTCCTTTCACCTCAGAGCTTCACCCAGGAGACACTCATAtcacctcctcatcatcatcgtcTTGCTCAGCAtattcatcatcttcatcattatcTTTTTCTTCATCATGATGTTCAGAGTTCTGATTCACCTGGCAGCTCTACCACTCTGGGTGACAGGGCAGTTGTTTAGCAGCATCGTTCATCAGAGGCCTGTGGCACTAACAGAAGGTCCTGGAGGAGACGTTCAACTCACCTGCAGCCATACGATCCCTAACTACTACGTGATACTATGGTACAAACAGTCAGCAGGAGACACTGCTATGAAACTCATTGGTTATGCATATACCAAGTCAATAACCATGGAGAATTCATTTGAAAAGCACTTCAATGTGAGTGGAGACGGTGGGAAAGAGGCTTATCTTCATCTAGTGAGTCTGAGAGGACCTGAACACAGTGCAGTTTATTACTGTGCAGCCAGCCAACACAGTGATGTAGActtcctcctgttctctactAAAAcccagtctgatggtaatattaGACCACGGCTCAGAACACCTGCATCTGAGGTTTGACTTTGACTCAGTGCCAATGAATAAACACAGATGGATGATGGCATAAGGTGATATCTGTCCTGGTACAGTATACCAGTATTTACAGTTT

Function

NR:

description
uncharacterized protein LOC110504270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962333.1 True 920 mRNA 0.44 2 43766272 43767362

Neighbor

gene id symbol gene type direction distance location
LOC118944157 LOC106591229 coding upstream 18524 43746645 ~ 43747748 (+)
LOC118944350 NA coding upstream 49479 43716114 ~ 43716793 (+)
LOC118944278 LOC106591229 coding upstream 295658 43469695 ~ 43470614 (+)
plekhd1 plekhd1 coding upstream 329961 43410955 ~ 43436311 (+)
LOC110505947 LOC106591369 coding upstream 370956 43376094 ~ 43395316 (+)
LOC118944282 LOC106591229 coding downstream 29466 43725448 ~ 43797824 (+)
LOC118944162 LOC106591229 coding downstream 127632 43894994 ~ 43895838 (+)
LOC118944163 NA coding downstream 161431 43928793 ~ 43929323 (+)
LOC110505949 NA coding downstream 198655 43966017 ~ 43985188 (+)
LOC110505943 ERH coding downstream 352870 44120232 ~ 44125771 (+)
G1984801 NA non-coding upstream 157877 43607429 ~ 43608395 (+)
G1984799 NA non-coding upstream 184605 43581320 ~ 43581667 (+)
G1984795 NA non-coding upstream 203037 43562914 ~ 43563235 (+)
G1984778 NA non-coding upstream 255879 43509603 ~ 43510393 (+)
G1984773 NA non-coding upstream 265570 43499948 ~ 43500702 (+)
G1984873 NA non-coding downstream 111778 43879140 ~ 43879515 (+)
G1984895 NA non-coding downstream 218822 43986184 ~ 43986397 (+)
G1984897 NA non-coding downstream 222115 43989477 ~ 43989681 (+)
G1984899 NA non-coding downstream 223881 43991243 ~ 43991712 (+)
G1984830 NA other upstream 7418 43752177 ~ 43758854 (+)
G1984843 NA other upstream 17640 43748166 ~ 43748632 (+)
G1984821 NA other upstream 93992 43657810 ~ 43672280 (+)
G1984803 NA other upstream 130771 43613548 ~ 43635501 (+)
G1984810 LOC106591229 other upstream 131846 43633832 ~ 43634426 (+)
G1984775 NA other downstream 3793 43771155 ~ 43771748 (+)
G1984853 NA other downstream 30977 43798339 ~ 43798806 (+)
G1984860 NA other downstream 49987 43817349 ~ 43817758 (+)
G1984871 NA other downstream 107722 43875084 ~ 43894564 (+)
G1984715 NA other downstream 167624 43934986 ~ 43935647 (+)

Expression


Co-expression Network