LOC118944282 (LOC106591229)


Basic Information

Item Value
gene id LOC118944282
gene name LOC106591229
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 43725448 ~ 43797824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962748.1
ctctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgccTGATGGGTTCATTGTCATGATCATGTAATCAGtcatgttcacagtgaggtcctATGAGCAAGCTTTACAGTACAGGCTTCCTGACACTCCCTCTAACACTGTCACTATCCACCACCCTGAAGGAAACATGCTACTACAACAGCCAATCTCCTTTCACCTCAGAGCTTCATCCAGGAGGCACTCATATCACATCATCATCGTCTTCTTCAGCAtgttcatcatcttcatcattatcTTTTTCTTCATCATGATGTTCAGAGTTCTGATTCACCTGGCAGCTCTACCACTCTGGGTGACAGggcAGTCGTTTAGTAGCATGGTTCATCAGAAGCCCGTGGCACTAACAGAAGGTCCTGGAGGAGATGTTCAACTCACCTGCAGCCATACGATCCCTAACTACTACGTGATACTATGGTACAAACAGTCAGCAGGAGACACTGCTATGAAACTCATTGGTTATGCATATACCAAGTCAATAACCATGGAGAAATCATTTGAAAAGCACTTCAATGTGAGTGGAGACGGTGGGAAAGAGGCTTATCTTCATCTAGTGAGTCTGAGAGGACCTGAACACAGTGCAGTTTATTACTGTGCAGCCAGCCAACACAGTGATGTAGACTTCCTCCTGTTCTCTACAAAAACCCTGCCTGATGGTAATATTAGACCAAGGCTCAGAACACCTGCATCTGAGGTTTGA
>TU2269340
gcagagtagaggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttattctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtagggggacctctaactctagttcttctaatgtctgatggtctcatcacatactgtaggggga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962748.1 False 826 mRNA 0.45 2 43796828 43797824
TU2269340 True 235 lncRNA 0.44 2 43725448 43796930

Neighbor

gene id symbol gene type direction distance location
LOC118944159 LOC106591229 coding upstream 29466 43766272 ~ 43767362 (+)
LOC118944157 LOC106591229 coding upstream 49080 43746645 ~ 43747748 (+)
LOC118944350 NA coding upstream 80035 43716114 ~ 43716793 (+)
LOC118944278 LOC106591229 coding upstream 326214 43469695 ~ 43470614 (+)
plekhd1 plekhd1 coding upstream 360517 43410955 ~ 43436311 (+)
LOC118944162 LOC106591229 coding downstream 97170 43894994 ~ 43895838 (+)
LOC118944163 NA coding downstream 130969 43928793 ~ 43929323 (+)
LOC110505949 NA coding downstream 168193 43966017 ~ 43985188 (+)
LOC110505943 ERH coding downstream 322408 44120232 ~ 44125771 (+)
si:ch211-168d23.3 LOC106611429 coding downstream 329555 44127379 ~ 44171961 (+)
G1984801 NA non-coding upstream 188433 43607429 ~ 43608395 (+)
G1984799 NA non-coding upstream 215161 43581320 ~ 43581667 (+)
G1984795 NA non-coding upstream 233593 43562914 ~ 43563235 (+)
G1984778 NA non-coding upstream 286435 43509603 ~ 43510393 (+)
G1984773 NA non-coding upstream 296126 43499948 ~ 43500702 (+)
G1984873 NA non-coding downstream 81316 43879140 ~ 43879515 (+)
G1984895 NA non-coding downstream 188360 43986184 ~ 43986397 (+)
G1984897 NA non-coding downstream 191653 43989477 ~ 43989681 (+)
G1984899 NA non-coding downstream 193419 43991243 ~ 43991712 (+)
G1984775 NA other upstream 25080 43771155 ~ 43771748 (+)
G1984830 NA other upstream 37974 43752177 ~ 43758854 (+)
G1984843 NA other upstream 48196 43748166 ~ 43748632 (+)
G1984821 NA other upstream 124548 43657810 ~ 43672280 (+)
G1984810 LOC106591229 other upstream 162402 43633832 ~ 43634426 (+)
G1984853 NA other downstream 515 43798339 ~ 43798806 (+)
G1984860 NA other downstream 19525 43817349 ~ 43817758 (+)
G1984871 NA other downstream 77260 43875084 ~ 43894564 (+)
G1984715 NA other downstream 137162 43934986 ~ 43935647 (+)
G1984979 NA other downstream 409439 44207263 ~ 44210719 (+)
LOC110505947 LOC106591369 coding upstream 330132 43376094 ~ 43395316 (+)
LOC110506001 rbm25 coding upstream 572883 43110612 ~ 43152565 (+)
G1984803 NA other upstream 89947 43613548 ~ 43635501 (+)
G1984807 NA other upstream 96640 43627992 ~ 43628808 (+)
G1984797 NA other upstream 150835 43574043 ~ 43574613 (+)

Expression


Co-expression Network