G1940699


Basic Information

Item Value
gene id G1940699
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 3323533 ~ 3323794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2220088
ggctacgaatgagcttacgctttctacgtattccccaaggtgtctacagcattgtgacgtctttttacgcatttatgttgaagaatagccgtaagggaccacattgagcaagtggtcacatgatggctcccgcagaaaatcttgtgtgaagtactgaggtagccattattacaatcgcttctaatgagaaaccaattgtcccgacggatatattatcgaatagatatgtgaaaaacaccttgaggattgattctaaacaacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2220088 True 262 lncRNA 0.42 1 3323533 3323794

Neighbor

gene id symbol gene type direction distance location
LOC118944335 NA coding upstream 51902 3262161 ~ 3271631 (+)
supt7l supt7l coding upstream 422934 2887551 ~ 2900599 (+)
si:dkey-16j16.4 LOC106610604 coding upstream 451810 2807447 ~ 2871723 (+)
rbks rbks coding upstream 541529 2705400 ~ 2782004 (+)
gnpnat1 gnpnat1 coding upstream 874463 2444335 ~ 2449070 (+)
LOC110505239 NA coding downstream 61099 3384893 ~ 3574638 (+)
LOC118936289 LOC106610601 coding downstream 283711 3607505 ~ 3632622 (+)
LOC110505243 LOC106610599 coding downstream 474021 3797815 ~ 3893089 (+)
eprs1 LOC106610596 coding downstream 1408384 4732178 ~ 4820880 (+)
LOC118944384 NA coding downstream 1493994 4817788 ~ 4817925 (+)
G1940542 LOC106607655 non-coding upstream 33068 3290008 ~ 3290465 (+)
G1940399 NA non-coding upstream 224823 3098437 ~ 3098710 (+)
G1940380 NA non-coding upstream 237603 3085614 ~ 3085930 (+)
G1940379 NA non-coding upstream 239990 3083338 ~ 3083543 (+)
G1940377 NA non-coding upstream 240479 3082815 ~ 3083054 (+)
G1940701 NA non-coding downstream 900 3324694 ~ 3325037 (+)
G1940770 NA non-coding downstream 102587 3426381 ~ 3437012 (+)
G1940842 NA non-coding downstream 211608 3535402 ~ 3536218 (+)
G1941033 NA non-coding downstream 572386 3896180 ~ 3922776 (+)
G1938701 NA other upstream 1517496 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 2354470 963874 ~ 969082 (+)
G1937035 NA other upstream 2667616 655528 ~ 655917 (+)
G1940966 NA other downstream 415744 3739538 ~ 3739790 (+)
LOC110505250 LOC106610594 other downstream 2062231 5385664 ~ 5404183 (+)
G1943555 NA other downstream 2375224 5699018 ~ 5699584 (+)
LOC110505260 LOC106613993 other downstream 2488739 5812504 ~ 5824543 (+)
G1944456 LOC106598199 other downstream 3141995 6465789 ~ 6467123 (+)

Expression


Co-expression Network