G1943497


Basic Information

Item Value
gene id G1943497
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5498977 ~ 5499206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223036
ctcttggctccaaCGACAATCTCATCATAGACTGGACTCCTGGTGCAGCCCATCCTCCCATGCCCATTGTCTGAAGTCAGCGCAGCCTGCCCCGTGACATCTTCCTGTGGGCTCGAAAGTTGCcccggagtaccaggacctccggcaGGTGTTCAGTAAGGCCTGGGCCACTTCGCTTCCGTGGCACCAAccctatgactgcgggattgaccttCGCCCAGGCCCCAATC

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223036 True 230 lncRNA 0.60 1 5498977 5499206

Neighbor

gene id symbol gene type direction distance location
LOC110504174 LOC106561892 coding upstream 8647 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 28192 5416814 ~ 5470785 (+)
LOC110505250 LOC106610594 coding upstream 94794 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 310917 4890876 ~ 5188060 (+)
LOC118944339 NA coding upstream 615837 4879881 ~ 4883140 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 42041 5541247 ~ 5549412 (+)
col10a1a LOC106610590 coding downstream 77989 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 115863 5615069 ~ 5693032 (+)
LOC110505259 LOC106610586 coding downstream 256352 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 313298 5812504 ~ 5824543 (+)
G1943496 NA non-coding upstream 368 5498379 ~ 5498609 (+)
G1943484 NA non-coding upstream 17371 5481292 ~ 5481606 (+)
G1943482 NA non-coding upstream 19583 5479182 ~ 5479394 (+)
G1943461 NA non-coding upstream 26319 5470839 ~ 5472658 (+)
G1943453 NA non-coding upstream 90419 5408101 ~ 5408558 (+)
G1943501 NA non-coding downstream 9268 5508474 ~ 5508810 (+)
G1943502 NA non-coding downstream 20355 5519561 ~ 5519860 (+)
G1943505 NA non-coding downstream 23209 5522415 ~ 5522643 (+)
G1943563 NA non-coding downstream 120429 5619635 ~ 5619930 (+)
G1943567 NA non-coding downstream 127711 5626917 ~ 5627210 (+)
G1940966 NA other upstream 1759187 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3692940 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4529914 963874 ~ 969082 (+)
G1937035 NA other upstream 4843060 655528 ~ 655917 (+)
G1943555 NA other downstream 199812 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 966583 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1445005 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 2024675 7523775 ~ 7605647 (+)

Expression


Co-expression Network