G1943501


Basic Information

Item Value
gene id G1943501
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5508474 ~ 5508810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223040
ATCTTAAGATATTAATACTGTATTTTTCGGAGTGTCATGTGTATTGGAGGAGTAGGTGCTTAATTGAACTACCAGTATGCATGTGTGATGAGTATCcatgcctgagacctgaagaatTGTGCTAGCTCCCGGAACTTATACCTTTGCTTTAACTAAATAGGCTAACACTGTCTTGCATCACTGATATTAATGAAGTTCAGTATCAAGCCAGTCACACATGTAAAGTAATGTAAGCAAGTTATTTCAGTTGTGCAAGTCTATAGCCTTAATTGTCATTTCATTTTTACAATTCTAAGCCATGGCGGGGGGTCTCAACTGACATAACATTGTTTTAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223040 True 337 lncRNA 0.37 1 5508474 5508810

Neighbor

gene id symbol gene type direction distance location
LOC110504174 LOC106561892 coding upstream 18144 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 37689 5416814 ~ 5470785 (+)
LOC110505250 LOC106610594 coding upstream 104291 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 320414 4890876 ~ 5188060 (+)
LOC118944339 NA coding upstream 625334 4879881 ~ 4883140 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 32437 5541247 ~ 5549412 (+)
col10a1a LOC106610590 coding downstream 68385 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 106259 5615069 ~ 5693032 (+)
LOC110505259 LOC106610586 coding downstream 246748 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 303694 5812504 ~ 5824543 (+)
G1943497 NA non-coding upstream 9268 5498977 ~ 5499206 (+)
G1943496 NA non-coding upstream 9865 5498379 ~ 5498609 (+)
G1943484 NA non-coding upstream 26868 5481292 ~ 5481606 (+)
G1943482 NA non-coding upstream 29080 5479182 ~ 5479394 (+)
G1943461 NA non-coding upstream 35816 5470839 ~ 5472658 (+)
G1943502 NA non-coding downstream 10751 5519561 ~ 5519860 (+)
G1943505 NA non-coding downstream 13605 5522415 ~ 5522643 (+)
G1943563 NA non-coding downstream 110825 5619635 ~ 5619930 (+)
G1943567 NA non-coding downstream 118107 5626917 ~ 5627210 (+)
G1943607 NA non-coding downstream 167012 5675822 ~ 5676256 (+)
G1940966 NA other upstream 1768684 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3702437 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4539411 963874 ~ 969082 (+)
G1937035 NA other upstream 4852557 655528 ~ 655917 (+)
G1943555 NA other downstream 190208 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 956979 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1435401 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 2015071 7523775 ~ 7605647 (+)

Expression


Co-expression Network