G1943502


Basic Information

Item Value
gene id G1943502
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5519561 ~ 5519860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223041
AAATAATGATGTAGGAATAAGTGCTTACTGTACCTttctccactgatctccacagtgacctgctcaaagggttccaggactctgcacacctcctccaccacctcccattcctcttgggtcagagcatcaacaggtgcattgacaatggccagggtagagatgatggcatcctttgactcaGGAAACCGCTTCAACATGTTGAATTCTaccttgtagtgcagtcttgtttTAGGCCTCAGCTCAGACATCCCTATCTGGAGTTGTGTAGACTTTAGTTTTTCAGCACCTACTGCGCTCCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223041 True 300 lncRNA 0.48 1 5519561 5519860

Neighbor

gene id symbol gene type direction distance location
LOC110505253 LOC106610592 coding upstream 7494 5493396 ~ 5512067 (+)
LOC110504174 LOC106561892 coding upstream 29231 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 48776 5416814 ~ 5470785 (+)
LOC110505250 LOC106610594 coding upstream 115378 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 331501 4890876 ~ 5188060 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 21387 5541247 ~ 5549412 (+)
col10a1a LOC106610590 coding downstream 57335 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 95209 5615069 ~ 5693032 (+)
LOC110505259 LOC106610586 coding downstream 235698 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 292644 5812504 ~ 5824543 (+)
G1943501 NA non-coding upstream 10751 5508474 ~ 5508810 (+)
G1943497 NA non-coding upstream 20355 5498977 ~ 5499206 (+)
G1943496 NA non-coding upstream 20952 5498379 ~ 5498609 (+)
G1943484 NA non-coding upstream 37955 5481292 ~ 5481606 (+)
G1943482 NA non-coding upstream 40167 5479182 ~ 5479394 (+)
G1943505 NA non-coding downstream 2555 5522415 ~ 5522643 (+)
G1943563 NA non-coding downstream 99775 5619635 ~ 5619930 (+)
G1943567 NA non-coding downstream 107057 5626917 ~ 5627210 (+)
G1943607 NA non-coding downstream 155962 5675822 ~ 5676256 (+)
G1943610 NA non-coding downstream 160302 5680162 ~ 5680449 (+)
G1940966 NA other upstream 1779771 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3713524 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4550498 963874 ~ 969082 (+)
G1937035 NA other upstream 4863644 655528 ~ 655917 (+)
G1943555 NA other downstream 179158 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 945929 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1424351 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 2004021 7523775 ~ 7605647 (+)

Expression


Co-expression Network