G1943505


Basic Information

Item Value
gene id G1943505
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5522415 ~ 5522643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223044
aaaatactgccccccacccaagagaggttaaaagtgctttcctcacaatcttaaataagcattccccattcaaaaaatgtagaacttgggaacagatatagcccgtggttcactcccgacctgactgcccttgaccagcacaaaaacatcctgtggcatacggcattagcattgaatagcccccacggtatgcaacttttcagggaagttagaaaccaatatacacagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223044 True 229 lncRNA 0.45 1 5522415 5522643

Neighbor

gene id symbol gene type direction distance location
LOC110505253 LOC106610592 coding upstream 10348 5493396 ~ 5512067 (+)
LOC110504174 LOC106561892 coding upstream 32085 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 51630 5416814 ~ 5470785 (+)
LOC110505250 LOC106610594 coding upstream 118232 5385664 ~ 5404183 (+)
LOC110505249 LOC106610595 coding upstream 334355 4890876 ~ 5188060 (+)
si:ch211-266g18.9 LOC106610591 coding downstream 18604 5541247 ~ 5549412 (+)
col10a1a LOC106610590 coding downstream 54552 5577195 ~ 5583625 (+)
LOC110505255 LOC106610589 coding downstream 92426 5615069 ~ 5693032 (+)
LOC110505259 LOC106610586 coding downstream 232915 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 289861 5812504 ~ 5824543 (+)
G1943502 NA non-coding upstream 2555 5519561 ~ 5519860 (+)
G1943501 NA non-coding upstream 13605 5508474 ~ 5508810 (+)
G1943497 NA non-coding upstream 23209 5498977 ~ 5499206 (+)
G1943496 NA non-coding upstream 23806 5498379 ~ 5498609 (+)
G1943484 NA non-coding upstream 40809 5481292 ~ 5481606 (+)
G1943563 NA non-coding downstream 96992 5619635 ~ 5619930 (+)
G1943567 NA non-coding downstream 104274 5626917 ~ 5627210 (+)
G1943607 NA non-coding downstream 153179 5675822 ~ 5676256 (+)
G1943610 NA non-coding downstream 157519 5680162 ~ 5680449 (+)
G1940966 NA other upstream 1782625 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3716378 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4553352 963874 ~ 969082 (+)
G1937035 NA other upstream 4866498 655528 ~ 655917 (+)
G1943555 NA other downstream 176375 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 943146 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1421568 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 2001238 7523775 ~ 7605647 (+)

Expression


Co-expression Network