G1943563


Basic Information

Item Value
gene id G1943563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5619635 ~ 5619930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223103
GGGCCACCTACTCTGGCTCCCCATCTTACAAGAGCAAGAGAATGACAATATACACCATATACACACCCCTTCATATTagaggatttggctatttcagccacacctgttgctgacaggtgtttaaaatcaagcacacagccatgcaatctccatagacaaacattggcagtagactgGCCCGTACTAAAGAGCTTAGAAACTTTCAGCATgggaccgtcataggatgccacctttccaacaagtcagttcgtaaaatttctgccctgctagacctCCCCTGGTCAGCTGTAAGTGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223103 True 296 lncRNA 0.47 1 5619635 5619930

Neighbor

gene id symbol gene type direction distance location
col10a1a LOC106610590 coding upstream 36010 5577195 ~ 5583625 (+)
si:ch211-266g18.9 LOC106610591 coding upstream 70223 5541247 ~ 5549412 (+)
LOC110505253 LOC106610592 coding upstream 107568 5493396 ~ 5512067 (+)
LOC110504174 LOC106561892 coding upstream 129305 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 148850 5416814 ~ 5470785 (+)
LOC110505259 LOC106610586 coding downstream 135628 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 192574 5812504 ~ 5824543 (+)
iqcc NA coding downstream 214204 5834134 ~ 5839930 (+)
LOC118944375 NA coding downstream 364758 5984688 ~ 5992380 (+)
grhl3 LOC106610656 coding downstream 402713 6022643 ~ 6038606 (+)
G1943505 NA non-coding upstream 96992 5522415 ~ 5522643 (+)
G1943502 NA non-coding upstream 99775 5519561 ~ 5519860 (+)
G1943501 NA non-coding upstream 110825 5508474 ~ 5508810 (+)
G1943497 NA non-coding upstream 120429 5498977 ~ 5499206 (+)
G1943496 NA non-coding upstream 121026 5498379 ~ 5498609 (+)
G1943567 NA non-coding downstream 6987 5626917 ~ 5627210 (+)
G1943607 NA non-coding downstream 55892 5675822 ~ 5676256 (+)
G1943610 NA non-coding downstream 60232 5680162 ~ 5680449 (+)
LOC110505255 LOC106610589 non-coding downstream 72112 5615069 ~ 5693032 (+)
G1943556 NA non-coding downstream 74602 5694532 ~ 5695850 (+)
LOC110505250 LOC106610594 other upstream 216853 5385664 ~ 5404183 (+)
G1940966 NA other upstream 1879845 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3813598 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4650572 963874 ~ 969082 (+)
G1937035 NA other upstream 4963718 655528 ~ 655917 (+)
G1943555 NA other downstream 79088 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 845859 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1324281 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1903951 7523775 ~ 7605647 (+)

Expression


Co-expression Network