G1943610


Basic Information

Item Value
gene id G1943610
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5680162 ~ 5680449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223150
attttggggcttcaccatgtttcgtcgaaatgtacagctgtttgtcatcagcatagcagtgaaagttaacattatgtttccgaatgacatcaccaagaggtaaaatatatagtgaaaacaatagcagtcctaaaatggaaccttgaggaacaaggtttacagttgatttgtcagaggacaaaccatccagagacaaactgatatctttccgacagataagatctaaaccaggccagaacttgtccgtgtaggctaatttgggtttccaatctctccaaaagaatgtgg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223150 True 288 lncRNA 0.40 1 5680162 5680449

Neighbor

gene id symbol gene type direction distance location
col10a1a LOC106610590 coding upstream 96537 5577195 ~ 5583625 (+)
si:ch211-266g18.9 LOC106610591 coding upstream 130750 5541247 ~ 5549412 (+)
LOC110505253 LOC106610592 coding upstream 168095 5493396 ~ 5512067 (+)
LOC110504174 LOC106561892 coding upstream 189832 5487708 ~ 5490330 (+)
si:ch211-266g18.6 LOC106610593 coding upstream 209377 5416814 ~ 5470785 (+)
LOC110505259 LOC106610586 coding downstream 75109 5755558 ~ 5766130 (+)
LOC110505260 LOC106613993 coding downstream 132055 5812504 ~ 5824543 (+)
iqcc NA coding downstream 153685 5834134 ~ 5839930 (+)
LOC118944375 NA coding downstream 304239 5984688 ~ 5992380 (+)
grhl3 LOC106610656 coding downstream 342194 6022643 ~ 6038606 (+)
G1943607 NA non-coding upstream 3906 5675822 ~ 5676256 (+)
G1943567 NA non-coding upstream 52952 5626917 ~ 5627210 (+)
G1943563 NA non-coding upstream 60232 5619635 ~ 5619930 (+)
G1943505 NA non-coding upstream 157519 5522415 ~ 5522643 (+)
G1943502 NA non-coding upstream 160302 5519561 ~ 5519860 (+)
LOC110505255 LOC106610589 non-coding downstream 11593 5615069 ~ 5693032 (+)
G1943556 NA non-coding downstream 14083 5694532 ~ 5695850 (+)
G1943619 NA non-coding downstream 18018 5698467 ~ 5698699 (+)
G1943648 NA non-coding downstream 71376 5751825 ~ 5752062 (+)
G1943649 NA non-coding downstream 71924 5752373 ~ 5752628 (+)
LOC110505250 LOC106610594 other upstream 277380 5385664 ~ 5404183 (+)
G1940966 NA other upstream 1940372 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3874125 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4711099 963874 ~ 969082 (+)
G1937035 NA other upstream 5024245 655528 ~ 655917 (+)
G1943555 NA other downstream 18569 5699018 ~ 5699584 (+)
G1944456 LOC106598199 other downstream 785340 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1263762 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1843432 7523775 ~ 7605647 (+)

Expression


Co-expression Network