G1943659 (fancm)


Basic Information

Item Value
gene id G1943659
gene name fancm
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 5778663 ~ 5780109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223201
GCAAACTGGTCACCCTCTCCACAAGCCGTTTGCGGTTCGGCATCCCGGCCAACTCCGACTGGCACTGCCTCTCGACTGCCATGCGGTTACTGACCACGAAGTCGCAGCCGTCCAGCGAGCACACGTGGGCCGCGACAGCGCAACGCTGGCGCAGGCTGGAGACTACATCCACGCAGGCTGTGATACAGCGGCTGTCCACCAGTACAGCGACAAGGCCCGATGGGTTCGATGACGAGGCAGGGGGCTTGCTTAGAGTGGCAGCCTGACCGAAGGAGCTCTGGGCGTGGGGtgctgaggaggtggCCTGTGGCTGTTTACTTGAGAGCAACAGAGACTCCGACTGCTCAAAGTCCAGCTCCTCAGACAGGAGGGCCTGCTGATGGAGCCTCTGGCGACACCTCTCTTCTTGCTGCTCCTCTCTAGGTCCCCTCACGGAGCTCACTGAGGAGGTCCTGCTGGTTCCACTTGGGGCACTAGGCTCCATCACAGAGTTCATAGAGGCTCCACTGAGGACTCTAGGCCCCACCACACAGCTTGCTGTGGAGGCTCTGGTGGATCCACCAGGGGGCACCTGCTGCCGTGGAGCTTTAAACACCCCGTCATTCTGTTGCTGTAACTCAGATAGCCTGCAGATGGCAGCAACACCTTCAGCTTTCACACCATGTCTACTTTTCTCCACTTCTTCTTCTGAGCTGGAGTCCTCCAAATGCACTATGCGGGAGCGCTTGTTTTTCCCAGCAGGATTAGGTTGAGGGTCAGCAGCCCTCTTGTCCAGAGTGGCAGGCCCGCTCCCAGCCTGAGCCCTGATGTTTCGGATCAGCGCCTTGCGTCTGGTGGGGTACTGCCTCCTCCCCTCCACGAACGAGTCCTCGTAGATAAGCTCCAATGggacctcctcatcctcctcgccgagctcttcctcatcactggccCTCACCACAAAGCTGTCCTCCGCGTATGTCTCGTC

Function

symbol description
fancm Predicted to enable 3'-5' DNA helicase activity; four-way junction DNA binding activity; and four-way junction helicase activity. Predicted to be involved in double-strand break repair via synthesis-dependent strand annealing; interstrand cross-link repair; and replication fork reversal. Predicted to act upstream of or within DNA repair. Is expressed in central nervous system; eye; and lens. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 15 and spermatogenic failure 28. Orthologous to human FANCM (FA complementation group M).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223201 True 967 lncRNA 0.60 2 5778663 5780109

Neighbor

gene id symbol gene type direction distance location
LOC110505259 LOC106610586 coding upstream 12533 5755558 ~ 5766130 (+)
LOC110505255 LOC106610589 coding upstream 86323 5615069 ~ 5693032 (+)
col10a1a LOC106610590 coding upstream 195038 5577195 ~ 5583625 (+)
si:ch211-266g18.9 LOC106610591 coding upstream 229251 5541247 ~ 5549412 (+)
LOC110505253 LOC106610592 coding upstream 266596 5493396 ~ 5512067 (+)
LOC110505260 LOC106613993 coding downstream 32395 5812504 ~ 5824543 (+)
iqcc NA coding downstream 54025 5834134 ~ 5839930 (+)
LOC118944375 NA coding downstream 204579 5984688 ~ 5992380 (+)
grhl3 LOC106610656 coding downstream 242534 6022643 ~ 6038606 (+)
si:dkey-221l4.11 LOC106610645 coding downstream 278568 6039841 ~ 6060719 (+)
G1943651 NA non-coding upstream 23611 5754746 ~ 5755052 (+)
G1943650 NA non-coding upstream 25744 5752718 ~ 5752919 (+)
G1943649 NA non-coding upstream 26035 5752373 ~ 5752628 (+)
G1943648 NA non-coding upstream 26601 5751825 ~ 5752062 (+)
G1943682 NA non-coding downstream 26561 5806670 ~ 5806920 (+)
G1943683 NA non-coding downstream 27101 5807210 ~ 5807838 (+)
G1943670 NA non-coding downstream 47372 5827481 ~ 5830542 (+)
G1943696 NA non-coding downstream 73527 5853636 ~ 5854773 (+)
G1943555 NA other upstream 79079 5699018 ~ 5699584 (+)
LOC110505250 LOC106610594 other upstream 375881 5385664 ~ 5404183 (+)
G1940966 NA other upstream 2038873 3739538 ~ 3739790 (+)
G1938701 NA other upstream 3972626 1805513 ~ 1806037 (+)
ccdc32 LOC106610623 other upstream 4809600 963874 ~ 969082 (+)
G1944456 LOC106598199 other downstream 685680 6465789 ~ 6467123 (+)
G1945166 NA other downstream 1164102 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1743772 7523775 ~ 7605647 (+)
G1946485 NA other downstream 2238329 8018438 ~ 8019290 (+)

Expression


Co-expression Network