G1944177


Basic Information

Item Value
gene id G1944177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 6049996 ~ 6057377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2223795
ctccatcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttctctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgttgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcagttttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttctatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataagtttgca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2223795 True 907 lncRNA 0.44 2 6049996 6057377

Neighbor

gene id symbol gene type direction distance location
grhl3 LOC106610656 coding upstream 11390 6022643 ~ 6038606 (+)
LOC118944375 NA coding upstream 57616 5984688 ~ 5992380 (+)
iqcc NA coding upstream 210066 5834134 ~ 5839930 (+)
LOC110505260 LOC106613993 coding upstream 225453 5812504 ~ 5824543 (+)
LOC110505259 LOC106610586 coding upstream 283866 5755558 ~ 5766130 (+)
si:dkey-221l4.11 LOC106610645 coding downstream 1300 6039841 ~ 6060719 (+)
rps6ka1 LOC106610660 coding downstream 166779 6224156 ~ 6338282 (+)
LOC110511457 LOC106588272 coding downstream 398452 6455829 ~ 6461197 (+)
LOC110504178 LOC106568776 coding downstream 410016 6467393 ~ 6469197 (+)
LOC110504314 LOC106568776 coding downstream 423203 6480580 ~ 6485118 (+)
G1943696 NA non-coding upstream 195223 5853636 ~ 5854773 (+)
G1943670 NA non-coding upstream 219454 5827481 ~ 5830542 (+)
G1943683 NA non-coding upstream 242158 5807210 ~ 5807838 (+)
G1943682 NA non-coding upstream 243076 5806670 ~ 5806920 (+)
G1944185 LOC106610658 non-coding downstream 10651 6068028 ~ 6070259 (+)
G1944240 NA non-coding downstream 94073 6151450 ~ 6152403 (+)
G1944241 NA non-coding downstream 95158 6152535 ~ 6167101 (+)
G1944242 NA non-coding downstream 96590 6153967 ~ 6176368 (+)
G1944250 NA non-coding downstream 117838 6175215 ~ 6179082 (+)
G1943555 NA other upstream 350412 5699018 ~ 5699584 (+)
LOC110505250 LOC106610594 other upstream 647214 5385664 ~ 5404183 (+)
G1940966 NA other upstream 2310206 3739538 ~ 3739790 (+)
G1938701 NA other upstream 4243959 1805513 ~ 1806037 (+)
G1944456 LOC106598199 other downstream 408412 6465789 ~ 6467123 (+)
G1945166 NA other downstream 886834 6944211 ~ 6951262 (+)
LOC110505283 LOC106610673 other downstream 1466504 7523775 ~ 7605647 (+)
G1946485 NA other downstream 1961061 8018438 ~ 8019290 (+)
LOC110505296 LOC106610680 other downstream 1972799 8029930 ~ 8116516 (+)

Expression


Co-expression Network