G1944526


Basic Information

Item Value
gene id G1944526
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 6651309 ~ 6653996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2224174
gtgtgtgtgtatgtttgagcGAGTCGCCTGTACCTCTgtttccctcctcttcccttgGATCCTTATACATATATACCTTTCTCTGggtttatatatgtatatatatgtatatttcatATTTTGGGCATTTTTTCTCTTGGTTTGTTTTGCGAGCAGAAAccaaatggattttttttttggcGGGGAGAATTGGGGAGGATTTTTGTGTTTTTAGGGGGGGTATCCCCATCGTGCCCTTTCCTACCCTTTCCCTTCTAACCCTGACTGTATGCGTGACACCTGCCTGCATCCCATCCCCTCAGACCCCCTCCAGCAGCACCCTGCACCCCTACCCCAGCCCCCGTGCACCCCTCTACTCCCGCCCCAGATGGTGCTTCACAGGACGGAGATGCGCCACAATCGAAGGACCCAAGGATATGGAGGAAATACTCTGCTCGCTGactattttttttctccattaggatGTTATCTGAAACGGCAGTGTTCttcttgtgtctaatattcaatCTAAACTCAAGGGAATCGAGCCCACTGGTCAAGATTTAAAGAAAAAGGAATTGTATATTATCACTAAGTGCCTCTGCAGATATGGATGTATGAGAGTCTTGGCGTATTCGCACCATTCTCATTTTGGTTTGATTATCACGTGTATTTACTCATTCATTTATTTGTGTGTATGTAGTCATTTCATTGAGTGTGGTGCTTTAAAGTATCTTGGATGTTTCACTTTTGCCTTTTTCTTTCCGTACGTGTCTTTAAGAGCTATACATGCTTgcgcaaggagagagagacagaaagagagcgagggagagagagatgagagagagggagggagggaataggatggagagagagagagagagagagagagagagagagagagagagccacacagCTGAAACTAACTATGACAGAGAAATGCTTGGTGTGGGTCTAACGGCTTGCGAACACCTTCACATGAACCACGGGCTGCAATCCGACCGCTAAGGGTAATGGATATAGCTTATAGCTTAGCATCTCTGTCgagccatttcagacacagtgtGTGTTATCATCCTTTGTTTTGCTACTACGGGCAAGgtctgactgcaggaatgaacTAGCAAGCAGGTACCAGGGCTGCATGATACAAAAAaggtacatttctctctctctctctctctctctggtgcatGGTTTACTGTAGCAGTAGCATGCTAAAATAGTATTCGCAATTCCATATGAATGTTTCTTTGACTGTGACTGGGTGTTTTTTCTGAACAGGTGTTGTTGGAATTGCTTcttcacatacatacacatatgcatacaCCCACCAGCACACTTACCACATACGTTGCAGGCAGCAGCATAGGCATGCATATAGacgttgcgtgtgtgtgtgtgtgtgtgtgtgtagtagcgAGTCCATGTTTCTTCCGTGTTCCAAGGGgctgcatgtatgtgtgtgtgcgtgggatTATCTGGCGAGGCGCTTCTGACTTGCAAAAAGGACGTCGGCAGAACAGCACCAGAGCcaagaggaagagaaggacaggtgaggatgagaggagagcgggaggagagttgatggactaaaacagagaggacgGACTAGAAGCTCTTAGGTCAAGCACAGTCGGGCACGTACAGGGGTGCAAGACTCTACATGCAGGCATCCACATGCAGACAAGACTCTACGTGGGactgagaagagaagaggggggcgGGAAAAGAACAGTGAATGTAAAGCAAAAAAGGCCAACTGAGAGAAAGGGATAGTAAAGTGATAGGGACGTAGCCTAGAAGGACAACTGAGAGAAAGGGATAGTAAAGTGATAGGGACGTAGCCTAGAAGGACAGGAtgaaaaggagaagaggaggaggttggAACTTGGGTTTGAGCTCTTTGTGTTCACAGTGGACCTTGATTTAATTTCAATACAATTAAGGCACGCGGTGAATGCCAAGAGAGAAGCCATGGACGTCACACACTTACTCACCTGAGAGACCAGCGAGCTGAACCAAAGATAAAGAAATGGGCAgatagatagagcgagagagagagagagagagatgcgtaCGTAGACCACCGCCATGGCCAAATGGACAGAGGGATCACGCCAGGGTAGCCACGGACCATGTGGCGAGAAGTGGAAATCAAATGGCAGTGTTTATGCATGTGTTCACATGCCTCCAAGGTACATGTGTcccatctgagagagagagagagagagagagaggggggagaaagatagGTAGACCCAAATTATGCCTTATATCTTCAGTGTTCCAACTAGAACGAATTCTCACCGGATTCTGAGtaacagcagggtagcctagccaACTGTGGCCCTAGTTGTTGGGACACTTATAGTTGGACGGATTTAGTAAACCAGTGCAGTACCGAAATTGATTTAAAAGGAGAACTGGTTGGTGAATCTATTACGTCTGGCTGATAGAAACTTATCTTCAGCTAAAATCCTATGCAGGCATCTGCCCATGTTCTTGCAAGTGAAATTCCACTCAACAAATATGCCCTTGCATTTTGGATGATGAAATATTGAAATTATAACCTCTATTTTTTTTGTAAGTATCCTTAAATAAAGCAGCAACATCGAGAGAAACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2224174 True 2605 lncRNA 0.46 2 6651309 6653996

Neighbor

gene id symbol gene type direction distance location
LOC110505277 NA coding upstream 15530 6628586 ~ 6635779 (+)
LOC110511456 LOC106568776 coding upstream 132521 6513554 ~ 6518788 (+)
LOC118944297 LOC106568776 coding upstream 158016 6490113 ~ 6493293 (+)
LOC118944298 NA coding upstream 161267 6487700 ~ 6490042 (+)
LOC110504314 LOC106568776 coding upstream 166191 6480580 ~ 6485118 (+)
LOC110505279 LOC106610668 coding downstream 86445 6740441 ~ 6746166 (+)
LOC110504181 NA coding downstream 96228 6750224 ~ 6768093 (+)
LOC110505283 LOC106610673 coding downstream 869779 7523775 ~ 7605647 (+)
LOC110505293 NA coding downstream 1293459 7947455 ~ 7981627 (+)
LOC110505295 mtfr1l coding downstream 1332190 7986186 ~ 8004937 (+)
G1944554 NA non-coding upstream 6367 6644739 ~ 6644942 (+)
G1944544 NA non-coding upstream 26296 6624713 ~ 6625013 (+)
G1944509 NA non-coding upstream 83354 6566287 ~ 6567955 (+)
G1944505 NA non-coding upstream 88339 6562747 ~ 6562970 (+)
G1944527 NA non-coding downstream 6137 6660133 ~ 6662147 (+)
G1944564 NA non-coding downstream 14204 6668200 ~ 6668419 (+)
G1944566 NA non-coding downstream 16583 6670579 ~ 6670986 (+)
G1944613 NA non-coding downstream 81995 6735991 ~ 6736208 (+)
G1944614 NA non-coding downstream 85115 6739111 ~ 6739436 (+)
G1944456 LOC106598199 other upstream 184186 6465789 ~ 6467123 (+)
LOC110505260 LOC106613993 other upstream 826986 5812504 ~ 5824543 (+)
G1943555 NA other upstream 951725 5699018 ~ 5699584 (+)
LOC110505250 LOC106610594 other upstream 1248527 5385664 ~ 5404183 (+)
G1940966 NA other upstream 2911519 3739538 ~ 3739790 (+)
G1945166 NA other downstream 290215 6944211 ~ 6951262 (+)
G1946485 NA other downstream 1364442 8018438 ~ 8019290 (+)
LOC110505296 LOC106610680 other downstream 1376180 8029930 ~ 8116516 (+)
G1947313 LOC106581772 other downstream 1944501 8598497 ~ 8598769 (+)

Expression

G1944526 Expression in all Baseline Samples

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G1944526 Expression in each Bioproject

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G1944526 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G203482 NA non-coding NC_053131.1 CM020928.1 17055131 ~ 17097020 (-)
mexican tetra (Astyanax mexicanus) G79179 NA non-coding NC_035905.1 CM008308.1 10189740 ~ 10192215 (+)