XLOC_000385 (pudp)


Basic Information

Item Value
gene id XLOC_000385
gene name pudp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32341484 ~ 32385665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000655
CGCATGGCAAGTTAAAGGTTGTCCTGAGTTACCACTCAAAAGCGCATCGCATGTAGAAAAGGGGGAAAGACgaaaatgaaacattttcatAAAAAACACTTACACTTGTTTAAACATTGTCATATATTGAAGATGGATATGAATCGAAGTACTCCTGCAATTGAGCGTGTTGATCTAAATGCAGCGTAACTTTTATCGTCCAGCAGTTTTCgcttctctgtctctctgtcaaTGAAGTTTCCGTAGTCACACAGTCGAGCTATCGTATCGCCAAAAACATGTCTTATAAACCAGTAACACACGTGCTCTTTGATATGGACGGGTTGTTACTAGATACAGAAAGATTGTACACAGTCTCGTTCCAGGAAGTTTGTGACAGGTTTAATAAGCAGTATACTTGGGAAGTGAAGTCCTCTGTTATGGGCAAAAAGGCTCTGGATGCTGCCAGGATTATAAGAGACAAAATTGGCCTTCCCATGACCCCTGAAGAGCTCCTAGAAGAGACCAGAAAAATTCAGGAGCGTTTGTTCCCCACAACTTCTCTGCTACCAGGTGTAGAAAAGCTTGTCAATCACCTACACAAGCATGGCATCCCTATTGCTGTTGGCACAAGCTCAGCAGGTCTGACCTTTGAGATGAAGACCAGCCGTCATAAAGAGTTCTTTAGCCTCTTCAGTCACATTGTGCTTGGAGATGATCCGGACGTAAAAAATGGCAAGCCACTCCCTGATACTTTTTTGGTGTGTGCCAAAAGATTCTCTCCCCCAGCCAACCCTAAACAGTGTTTGGTTTTTGAAGATGCTCCAAACGGGGTGAAGGCGGGTCTAGCAGCTggcatgcaggtggtgatgatcCCTGATGATAACCTGGACCGCAGCCTCACCCAGGAAGCCACCTTACTGCTTAGAAGCATGGAAGACTTCAGACCAGAACTCTTTGGTCTCCCAGCCTACGCGTAAGGACAGCAATCACCACAGTGATTTCAATTCCACTTCGCTTTATCCTGTCAATTTTTGAAAAATGGAATCAGGCTGCAGTGTAGCTCCTGCAATCAAAAACAGGAGAAACTAATCTCTACTATTACTTCTGTCAGCCATGGATTTGCTGTTCAGGGACACAACGGAATGCTGAttgtttcaattatttattttttttttttttggccaatcACAACACTGAATCTCTTTCCTTCGACCGCCCGGATGACACAAGACAAATTTGATTATGCTGCTCAATTAGCTTCAGTGAAACCATTAGGATTTATTGACATTTTGCGTTTTAGCTAATTACTGTGTGACATTTTTTatctatatactttttttttcagatctagTGCAAGTGGCTCAAGCTGTAATGTTTGCATCACTTTAAATAAATTTCCAATTCAGAGCTCACAA
>TCONS_00000656
ACAGTCGAGCTATCGTATCGCCAAAAACATGTCTTATAAACCAGTAACACACGTGCTCTTTGATATGGACGGGTTGTTACTAGATACAGAAAGATTGTACACAGTCTCGTTCCAGGAAGTTTGTGACAGGTTTAATAAGCAGTATACTTGGGAAGTGAAGTCCTCTGTTATGGGCAAAAAGGCTCTGGATGCTGCCAGGATTATAAGAGACAAAATTGGCCTTCCCATGACCCCTGAAGAGCTCCTAGAAGAGACCAGAAAAATTCAGGAGCGTTTGTTCCCCACAACTTCTCTGCTACCAGGTGTAGAAAAGCTTGTCAATCACCTACACAAGCATGGCATCCCTATTGCTGTTGGCACAAGCTCAGCAGGTCTGACCTTTGAGATGAAGACCAGCCGTCATAAAGAGTTCTTTAGCCTCTTCAGTCACATTGTGCTTGGAGATGATCCGGACGTAAAAAATGGCAAGCCACTCCCTGATACTTTTTTGGTGTGTGCCAAAAGATTCTCTCCCCCAGCCAACCCTAAACAGGTAGGATGAAGCTACTCAGCTATTGCATTCTATTTCAGTCTAGTCTAATAATTTTATGGAAGCAGTGCAGAAAACCCACAAAATCAAGGAATCAATTTGTACATGAACAAAGACATGCACAAATACAACATGAAGTATTTTGTTACATATTACAAATACATgcttatcaaatttatttaaataaaatactaaatgcaGATTTGTGAAGTGTAGGCTTTGATTGAAATACATGTAATG

Function

symbol description
pudp Predicted to enable phosphatase activity. Is expressed in epidermis and somite. Orthologous to human PUDP (pseudouridine 5'-phosphatase).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050522-36 Predicted to enable phosphatase activity. Is expressed in epidermis and somite. Orthologous to human PUDP (pseudouridine 5'-phosphatase).

Ensembl:

ensembl_id ENSDARG00000027826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000655 False 1397 mRNA 0.42 4 32341484 32385665
TCONS_00000656 True 769 mRNA 0.40 3 32341734 32342951

Neighbor

gene id symbol gene type direction distance location
XLOC_000384 sts coding upstream 264011 32051581 ~ 32077473 (+)
XLOC_000383 BX901898.1 coding upstream 323369 32017437 ~ 32018115 (+)
XLOC_000382 BX901898.2 coding upstream 326997 32013688 ~ 32014487 (+)
XLOC_000381 NA coding upstream 329106 32011880 ~ 32012378 (+)
XLOC_000380 NA coding upstream 329690 32010262 ~ 32011794 (+)
XLOC_000386 CU462859.1 coding downstream 128324 32513989 ~ 32514104 (+)
XLOC_000387 nlgn4xa coding downstream 135804 32521469 ~ 32693950 (+)
XLOC_000388 CU915272.1 coding downstream 320444 32706109 ~ 32706227 (+)
XLOC_000389 zgc:174320 coding downstream 406255 32791920 ~ 32793644 (+)
XLOC_000390 BX322647.1 coding downstream 829576 33215241 ~ 33216718 (+)
XLOC_000371 CT573247.1 non-coding upstream 820512 31519239 ~ 31520972 (+)
XLOC_000370 NA non-coding upstream 982165 31354585 ~ 31359319 (+)
XLOC_000394 NA non-coding downstream 1132137 33517802 ~ 33518823 (+)
XLOC_000400 CU915566.1 non-coding downstream 1349353 33735018 ~ 33735134 (+)

Expression


Co-expression Network