XLOC_038509 (clcn2b)


Basic Information

Item Value
gene id XLOC_038509
gene name clcn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NW_003336964.1
NCBI id KN150171.1
chromosome length 140649
location 22085 ~ 130516 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075888
AAAAAAAGCTCTCCAGTGAGCCCTATCAGTGTGTCTGCCGGCAGTGCTGTCTACGTAGGGCGCATGTATGCTGCGTGTATGCAGCCAGGCGCGTGCGCAGCGGGCGTGGCTAGTCTCCTCAAGCCCCGCCCCTCGCTCAACAGATCACAAACTTCAGTCAGAAGTGTTTCAGTCACGGAGCGCGTCATCACGCAAGACGGTTTAGACGCTCGCGGGTCCGTGTCGGTGTGCGGGAGCTGCTCTGCGGTTCCCCgagtgtgtgaagtgtgtgtgaAGCGTGTGTGAGAGCTGCAGTCATGGCTGTGGACGGACAAGAGCAGCGCGCGCTCCAGTATGAGCAGACTCTGatgtatgGCCGCTACACTCAGGAACTGGGTGTATATGCTAGAGAAGAAGCAGCTCGTCTGCGTGAGGATGGCCGACAGCGACGCTCCATTTCTGAACGCAGTCCGTCGCTCAAACTGCTGGAGTACGAGAAGGGAAGATGCGTCAAGTGTCGAAtctgtGCAGTGCACTGTCAGCGGTTCCTCATGTCGCGGGTCGGCGAGGACTGGATCTTCCTCATTTTACTGGGACTGGTCATGGCTCTGGTCAGCTTCGTCATGGACTTCTGCATCGCACTCCTCCTGCAGGCACAGAAATGGATGTACGGTGGCCTGGACAGTAATGTGGTGCTGCAGTATCTGGCGTGGGTCACTTATCCTGTGGTGCTCATCAGTTTCTCTGCCGGTTTCACACACATTGTCGCTCCACAGGCAGCCGGCTCTGGTATTCCCGAGATGAAGACGATCCTCAGAGGTGTGGTGCTGAAGGAATATCTCACACTCAAGACCTTCGTGGCCAAAGTGGTCGGCCTGACCTGTGCGCTGGGTAGCGGCCTTCCTCTGGGGAAAgagGGTCCGTTTGTGCACATCGCCAGTCTGTGTGCGGCTCTCCTCTGCAAGTTCATGTCTTTCTTTGGTGGAATTTATGAGaatGAGTCCAGGAACATTGAGATGTTGGCTGCGGCCTGTGCTGTCGGCGTCGGCTGCTGCTTTGCTGCTCCCATTGGAGgtgTGTTGTTCAGCATTGAGGTCACCTCCACGTTTTTCGCCGTGAGGAATTACTGGCGTGGATTCTTTGCCGCCACATTCAGTGCCTTCATCTTCAGAGTCCTGGCCGTCTGGAACAGagatgaagAAACCATCACTGCTCTCTTCAAGACGCGCTTCAGGCTTGATTTCCCCTTCGACCTGCAGGAGCTTCCAGCATTCGCCGTCATCGGGATCGCCAGTGGGTTTGGTGGAGCTCTGTTTGTGTATCTGAACAGGCTGATCGTTCAGTTCATGCGCAAACAGAAAACCATTAACAAGTTCCTCATGAAGAAgcgtCTGCTATATCCTGCTCTCGTTACTCTACTGATATCCACACTCTCCTTTCCACCAGGCTTTGGTCAATTCATGGCAGGacagCTCACACAGAAGGAGACGCTCGTTTCGTTCTTCGACAACCGTACCTGGGCCAAGCAGGGCATCTCAGAGGACTTCACCTTCGACACACACCTGATGGCCTGGAAACACCCACAGGCCAACGTCTTCATCATCCTCGTCATCTTTATCATCATGAAgTTCTGGATGTCTGCTTTAGCCACAACGCTGCCGGTGCCCTGCGGAGCCTTCATGCCGGTTTTCGTCATTGgtgctGCGTTTGGTCGTCTGGTGGGTGAAAGTATGGCTGCCTGGTTTCCAGAGGGCATCAACACAGACGGCACCATCTATCCCATAGTTCCCGGTGGATACGCTGTTGTGGgaGCTGCAGCGCTGTCCGGAGCCGTCACACACACTGTCTCTACAGCAGTGATCGTGTTTGAGCTGACGGGTCAGATCAGTCACATTCTGCCCATCATGATCGCTGTGATTTTAGCCAACGCTGTGGCTCAGAGTCTGCAGCCGTCCATCTATGACTCCATCATCCGCATCAAGAAGCTGCCATACCTGCCGGAGCTGGGCTGGGGACACCATGAgaagtATAATATCCGCGTGGAGGACATCATGGTGCGAGATGTTCGTTATATCACACTGAACTCCACATACAGAGACCTGCAAGACATCCTCACGATCGGAAACCTCAAAACTGTGGCGCTGGTGGAGTCTGCAGATTCGATGATTCTGCTGGGCTCTATTGAGCGCGCTCAGTTGCAGGCTCTCCTGGTTCAGCAGGTGAGCCGGGTGCGGCGACAGGAAGTGATGCGTGAGCGGGCGGAAACAGAGAGGAAGCGTATGTCGGTGGCCAGTTCACCCAGCAGTGATGACAGCAGTCAGAAAGTCAACCAGGAGGTTCGCTTCCAGATCTCCACAGAAGAGTCTACGTTCGTTCCAGTTCGCCCGATCTCTCCCAAACCTCTGAAACCTGCGCTGAAGAGGACATCTGTTGCTGAGAAAAACATCGAGATCCCAACCAgtccTCATGACTCCAGCATGGGTCTGAAGAATCTGCTGTGTGCTCGTCCTCAGACAGACGTGATGGAGGAGgatgATCCAGACGCAGAGGATGACATGACTCTTGGAGAGatTGAAGAGTGGGAGGAGCAACAGCTTGACGAGCAGGTGAACTTCAACAGCTGCAAGATTGACCCCGCCCCCTTCCAGCTGGTTGAGCGAACATCGCTACAcaagACTCACACCATCTTCTCTCTGCTGGGTTTGGATCATGCATACGTCACCAGCATCGGGAGACTCATTGGAGTGGTTTCATTGAGAGAGctgcgTAAAGCCATCGAGGGCTCCATGACGGTGAAGGGAGTGAAGGTTCGTCCTCCGCTGGCCAGTTTCAGAGACAGCGGAACCAGCGGCACCAGCAGCGAGAGCGAAGCCACAGAACTGCACAAACTGTGGGACAGACACTCCAGCCTGAGCCTGCCCCGAGACCAGCAGAACCACAACACTGACAACAAGACACACTGACCACTGTGTGTCGGTGCAGCAGAGGATCAGCTTCAGTAGGACCGAGGGGCTTTTTTTCCGCCAGGATCAGTTTTATCTGTGGGTCAGTTTAGAGAATCAGGCTCTTGCTCAGCGCTTCCGTCTTGTTTTCCAGCATAAATACACAAACTGTGCTCTTAAATCAAGATTTATTTACTGGAGAAGCGAAATCACTGAATATAtaagtcttgtttatttttttagtttttataaataaataaattattaaacatagATTGAGTTTATGCTTATGAAAACAGCCTCTGGGGTCAGAAAAATCAGCTGTTTTTTGTTTCGAGTAAacaacatttcatttttaatgatttttttcatcTCAAGTTTTCCTAGCATCATCTTAAAGTTCTCATGAAATTATAATAAAGTTTGGTCACactatattttgatggtccattagttgaatttaagttacattgcatctactaattctcattagattataagtagactgttaggttggggttatgtCTATGTCTCTAGTGTCTAAAtgtgttaaaggagcagtatcaacaaatattaagcagacagtctactaatactcaactgaaccatcaaaataaagtgttgcctaaagtttttttagatgttagcatcagtatCATTTGTTTTTAAGATTTCTATAAGCTAGAGTGCTCCAAAACACTGACAAAATTGGCATTTAGAAGATCTAAAACTCATATaagcatgtaaagcttgtagttctCACCTGGATCTACACGTCACCTCacactacagtttctcatcacatcataaccaatcaaatgctctctagtatctggcaTGCTCCGCCCCCTtttaagatgcttctcatttgctgttcatttgatgcacttgagctcaacaaCTCTCACTGGAAGAGTGCTgatgaaacaaaatgctattggctgtttttcagaaaggggaggggctactctgtTCCACCCTCTctgtgttttggttgagattacgttaaacataaaaatgcacacttcacgggaccttttaGAGTTGTTAAAATCACCCAAGATAGGATTGAGATtattaataaacttttaaaacgAGGGGGAAATTATTTAATCagaattaaaacgtttaaaagttttaagtcaaaattaaaagttttaagcGAAAAATTTCCTGATTTTCACACTTTAATTTAGTAAACATCCTTTAATATCACACTTTATATTAGATGTATCTTcattttcaagagtttacactaggctgatgattgattataaagcttgtttggcatgttgtcccagGAGAGatgatcttatgagctcagggctccctcccattgcagggcgagaggggagtttgagcttaggtaggtctcgagaactcccctgctgtagtagctaatgaacagatagtgattgctcttcgGAGATAATtatacttactaggagcatgtgtatggtgccgatttggattagttgattaacttaagttgcatgttattggacggtgggaggaaaccgaggGACCCTTGGGAAACctaagcacggggagaacatgtaaactccgcacagaaacgttggctgggttggtaaggactagaaccattgacgttcttgctgtgaggcaacagtgctaaccactgggccacggtgccacccatctaggaaagagaaggagtaggggtggaaggggggattcttaaaAATgtagatggctgtcatatggaacttagagtatttatagtgacttaagaatcgtctgattggAGAGTCATGAATTAAATAATGCGAGACCAGCCCCAAGTAAACATAAGCACATGGTCCTCTCCagattagtttataaataaacttcaattaaaaatattatgtgtgCAATTAAagatgcaatatatattaaagctTAAATAtcccataatatgtttgcagatacacaagtgaatatatatatatgatcaataTCACGCTCATAGCactgcaatatggctgtatatcggcacgaGCGGAAGGCGTGCATTGGCGCGAGGCTGCAGGCAAGAGTGCGTTAGTGTcccactagtgctgatatacagccatatcgcactgctatgagtgtgatatagtgtttatacaacagtttgacggcataattgtgtatatatatatacagaagaaaatcaatcagagtctaaaaacccttttgtacgaggaactactttcttccgccattcatttacatctgcagctgacatcagaacagcggaagccgttactaattcacctacgtcactttagagcaagtgtttgaatgactctctagcGTAATGactagtgatgacaaaacagctgattttgctgacattttaagatgaaatgacagacagcatgaaatgccatcagtttgCAGAGATTTCCCAGCATTTCTCAGGAGCAATCGGGAGTTAACAATAATTAAGCAAGCAAGcacagattactgttgtgtttgtgataaggaaaaaaaCGCTTAAAACATGCGGgaatttcttctctttttttgttttctcaaCTAGTCTGctgtaacgaaaacaggagactcattaggaGACTGTTCATGATCAAACAGATGGccagagtggccaacacaaaatgcaAACATTCCTGATATGTGCATCCCATCTTACACTCAATCCATAACAATAACtatggtgtaaatacagcactacaacatacaaaagataGAGACTTAGAATGTCATTTATCTGCTTTATAataatttgttcagctgtagtttgaaattacgctgagtttttctcTTTTAAGGACTttttatgcagtctctgtcgccatcttgtggcggattgtcaaccgtctttgctctgctcagtatggcaGGCTCATGGTTGTCAAtgtgctgtctctcagaaattataaatatttaaaataggcactgtccttataaataaactgcatagttgcaatctaaacatctACATCCTCGCCTTAAAatgcctcaaaagtacatgatgttgtccaacagctgcaatatttgtcaaactgtagtgagtttattgatctgctgtcactctatgtgggcggagtaatatacAAGGGTGAAGAGACTGTATGAGTGCTGCTatggcagaatatcgcacggctatcagccaatcaggttcaagaaccagacagaactgttgtataaaaagtattcataaatataattttttaaaacttttttaataaaaaacaagactTCATATCTCAAGTAGTTATCAACCGagtttaaaaatatgcatacaattattacaaatatattattaatatagtaaCATATAGTAAACCAGTTTGTATATAGCAGTATTTGTACTTTTTCTATACATCATTTGCATTTTGTGAGGAAAAACAAGCATATTTTTGACCTCATTAGGcagatttcaaatatttttaaagcaaaatgtattaaaaatgaataattattattattgataacgATAATATAACATTTGAGACTCAAATCCCTTTACATTTGTGTGTATTTGGTGTTTCCTCCAGCTTGATTgcaagatctgtgtgtgtgtgtttgtaatgtaAAGTGAGACAGAAGCGCAGTGCAGGATCTGCTGCCCACTCCTCTTCACACTCATTACACTTTCACACAGTTATGTAAGATTGCGCACTTTTTATTCAAATGATCTTTCATGCACACTAATGGGCCTTTCTGAAAGATTGGCcgtcatttattattgttattattattatgttttttgttttctttttgcatGTTTGCACTTGAGGACGATTCAATGAAATCTATCACAGTCAAGAATATTTGCAATAATGCTAATCATGAACAAACTAATGATGTTTTTACGTGAtcaggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgtgtttgctgcAGGAAAATGATAAAAATCAGTGTTTGTGTTGATGTGCATG
>TCONS_00075889
ATGGCTGTGGACGGACAAGAGCAGCGCGCGCTCCAGTATGAGCAGACTCTGatgtatgGCCGCTACACTCAGGAACTGGGTGTATATGCTAGAGAAGAAGCAGCTCGTCTGCGTGAGGATGGCCGACAGCGACGCTCCATTTCTGAACGCAGTCCGTCGCTCAAACTGCTGGAGTACGAGAAGGGAAGATGCGTCAAGTGTCGAAtctgtGCAGTGCACTGTCAGCGGTTCCTCATGTCGCGGGTCGGCGAGGACTGGATCTTCCTCATTTTACTGGGACTGGTCATGGCTCTGGTCAGCTTCGTCATGGACTTCTGCATCGCACTCCTCCTGCAGGCACAGAAATGGATGTACGGTGGCCTGGACAGTAATGTGGTGCTGCAGTATCTGGCGTGGGTCACTTATCCTGTGGTGCTCATCAGTTTCTCTGCCGGTTTCACACACATTGTCGCTCCACAGGCAGCCGGCTCTGGTATTCCCGAGATGAAGACGATCCTCAGAGGTGTGGTGCTGAAGGAATATCTCACACTCAAGACCTTCGTGGCCAAAGTGGTCGGCCTGACCTGTGCGCTGGGTAGCGGCCTTCCTCTGGGGAAAgagGGTCCGTTTGTGCACATCGCCAGTCTGTGTGCGGCTCTCCTCTGCAAGTTCATGTCTTTCTTTGGTGGAATTTATGAGaatGAGTCCAGGAACATTGAGATGTTGGCTGCGGCCTGTGCTGTCGGCGTCGGCTGCTGCTTTGCTGCTCCCATTGGAGgtgTGTTGTTCAGCATTGAGGTCACCTCCACGTTTTTCGCCGTGAGGAATTACTGGCGTGGATTCTTTGCCGCCACATTCAGTGCCTTCATCTTCAGAGTCCTGGCCGTCTGGAACAGagatgaagAAACCATCACTGCTCTCTTCAAGACGCGCTTCAGGCTTGATTTCCCCTTCGACCTGCAGGAGCTTCCAGCATTCGCCGTCATCGGGATCGCCAGTGGGTTTGGTGGAGCTCTGTTTGTGTATCTGAACAGGCTGATCGTTCAGTTCATGCGCAAACAGAAAACCATTAACAAGTTCCTCATGAAGAAgcgtCTGCTATATCCTGCTCTCGTTACTCTACTGATATCCACACTCTCCTTTCCACCAGGCTTTGGTCAATTCATGGCAGGacagCTCACACAGAAGGAGACGCTCGTTTCGTTCTTCGACAACCGTACCTGGGCCAAGCAGGGCATCTCAGAGGACTTCACCTTCGACACACACCTGATGGCCTGGAAACACCCACAGGCCAACGTCTTCATCATCCTCGTCATCTTTATCATCATGAAgTTCTGGATGTCTGCTTTAGCCACAACGCTGCCGGTGCCCTGCGGAGCCTTCATGCCGGTTTTCGTCATTGgtgctGCGTTTGGTCGTCTGGTGGGTGAAAGTATGGCTGCCTGGTTTCCAGAGGGCATCAACACAGACGGCACCATCTATCCCATAGTTCCCGGTGGATACGCTGTTGTGGgaGCTGCAGCGCTGTCCGGAGCCGTCACACACACTGTCTCTACAGCAGTGATCGTGTTTGAGCTGACGGGTCAGATCAGTCACATTCTGCCCATCATGATCGCTGTGATTTTAGCCAACGCTGTGGCTCAGAGTCTGCAGCCGTCCATCTATGACTCCATCATCCGCATCAAGAAGCTGCCATACCTGCCGGAGCTGGGCTGGGGACACCATGAgaagtATAATATCCGCGTGGAGGACATCATGGTGCGAGATGTTCGTTATATCACACTGAACTCCACATACAGAGACCTGCAAGACATCCTCACGATCGGAAACCTCAAAACTGTGGCGCTGGTGGAGTCTGCAGATTCGATGATTCTGCTGGGCTCTATTGAGCGCGCTCAGTTGCAGGCTCTCCTGGTTCAGCAGGTGAGCCGGGTGCGGCGACAGGAAGTGATGCGTGAGCGGGCGGAAACAGAGAGGAAGCGTATGTCGGTGGCCAGTTCACCCAGCAGTGATGACAGCAGTCAGAAAGTCAACCAGGAGGTTCGCTTCCAGATCTCCACAGAAGAGTCTACGTTCGTTCCAGTTCGCCCGATCTCTCCCAAACCTCTGAAACCTGCGCTGAAGAGGACATCTGTTGCTGAGAAAAACATCGAGATCCCAACCAgtccTCATGACTCCAGCATGGGTCTGAAGAATCTGCTGTGTGCTCGTCCTCAGACAGACGTGATGGAGGAGAGTAATAACGTGGAGCTCAGACAGAGCAAACGCGTGCGGATCTCACTGTTGgatgATCCAGACGCAGAGGATGACATGACTCTTGGAGAGatTGAAGAGTGGGAGGAGCAACAGCTTGACGAGCAGGTGAACTTCAACAGCTGCAAGATTGACCCCGCCCCCTTCCAGCTGGTTGAGCGAACATCGCTACAcaagACTCACACCATCTTCTCTCTGCTGGGTTTGGATCATGCATACGTCACCAGCATCGGGAGACTCATTGGAGTGGTTTCATTGAGAGAGctgcgTAAAGCCATCGAGGGCTCCATGACGGTGAAGGGAGTGAAGGTTCGTCCTCCGCTGGCCAGTTTCAGAGACAGCGGAACCAGCGGCACCAGCAGCGAGAGCGAAGCCACAGAACTGCACAAACTGTGGGACAGACACTCCAGCCTGAGCCTGCCCCGAGACCAGCAGAACCACAACACTGACAACAAGACACACTGACCACTGTAagagaatctgtgtgtgtgtgtgagtgtatgtacaggggttggacaatgaaactgaaggAGGAAACTagaggtttcatggctaaatgtGAGCATCTGGTGGCTAAACTTCATAGATTTTCATTCTGCCAGTAAGAGGACACAGTGcaggtttaattagcagagtaacAGCACAGCTTTGATTTAAATATTGCAGTGCACACAACATTATGGCTGACAGATCAGAGTTCAGATGAGGACAAATTGCTGATGTGCATTTCGCTGGTGCATGTGTGACCAGGACAGCAAGACTTTGTGATTATCATGAACAACCAGAgtaatgtcagcataccaccGAGAAGGACCAACAACAaccaacaggagtaactgtgcattaccggcaattttccggaaaggttgtatgtatgaacaggtcctttttgaaaatgctggtaaattcgttctgactattttccggaaagagaagttgtaatattagcggtaatttgccggaatgctgcgctgtgtgaatgcagaagga

Function

symbol description
clcn2b Enables chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Located in cell junction. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. Orthologous to human CLCN2 (chloride voltage-gated channel 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function
GO:0005254 chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-151006-1 Enables chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Located in cell junction. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. Orthologous to human CLCN2 (chloride voltage-gated channel 2).

Ensembl:

ensembl_id ENSDARG00000104550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075888 False 6884 mRNA 0.44 24 22085 130516
TCONS_00075889 True 3222 mRNA 0.52 24 30898 130220
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Expression

Expression of XLOC_038509(clcn2b) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Expression of XLOC_038509(clcn2b) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location