G1954045


Basic Information

Item Value
gene id G1954045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 14343756 ~ 14344456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2234514
tccccaaggtgtttgcagcattgtgacgtatttgtaggcatatcattggaaaattgaccataagagactacatttaccaggtgtccgctcggtgtcctccgtcgaaactattgcgtaatctccaggtgcgtgcatttttccattttgaacagaggagaaacaaaactgccacgagtgatttatcatcgaatagatatgtgaaaaacaccttgaggattgattctaaacaacgtttgccatgtttctgtcgatattatggagttaatttggaaaaaagtttgcgttgtaatgactgaattttcgtttttttttcttagccaaacatgATGAACAAaatggagcgatttctcctacacaaataatatttttggaaaaactgaacatttgctatctaactgagagtctcctcattgaaaacatccaaagttcttcaaaggtaaatgattttatttgaatgcttttcttgtttttgtgaaaatgttgcctgctgaatgctaggcttaatgctatgctagctatcaatactcttacacaaatgcttgtgtagctatggttgaaaagcattttttgaaaatctgagatgacagtgttgttaaccaaaggctaagcttgtgagccaatatatttatttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgaggctacaattacgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2234514 True 701 lncRNA 0.36 1 14343756 14344456

Neighbor

gene id symbol gene type direction distance location
LOC110504319 NA coding downstream 101405 14239968 ~ 14242351 (-)
LOC110505392 erich1 coding downstream 189073 14139614 ~ 14154683 (-)
LOC110505391 LOC106574021 coding downstream 238061 14083317 ~ 14105695 (-)
adi1 adi1 coding downstream 557978 13781747 ~ 13785778 (-)
eipr1 tssc1 coding downstream 578951 13681953 ~ 13764805 (-)
LOC110504195 LOC106610782 coding upstream 187000 14531456 ~ 14536239 (-)
LOC110505399 LOC106610784 coding upstream 197571 14542027 ~ 14643437 (-)
LOC110505402 LOC106610785 coding upstream 314010 14658466 ~ 14882041 (-)
LOC110505408 LOC106610790 coding upstream 636132 14979251 ~ 14992420 (-)
LOC110505403 LOC106610786 coding upstream 650762 14995218 ~ 15098621 (-)
G1954040 NA non-coding downstream 7457 14336090 ~ 14336299 (-)
G1954013 NA non-coding downstream 45411 14298045 ~ 14298345 (-)
G1953994 NA non-coding downstream 77414 14263573 ~ 14266342 (-)
G1953595 NA non-coding downstream 106657 14236891 ~ 14237099 (-)
G1953592 NA non-coding downstream 108075 14235365 ~ 14235681 (-)
G1954056 NA non-coding upstream 11582 14356038 ~ 14356615 (-)
G1954072 NA non-coding upstream 36659 14381115 ~ 14381578 (-)
G1954075 NA non-coding upstream 41532 14385988 ~ 14386342 (-)
G1954079 NA non-coding upstream 49074 14393530 ~ 14393779 (-)
G1954083 NA non-coding upstream 54833 14399289 ~ 14399567 (-)
LOC110505361 LOC106610752 other downstream 1591518 12744406 ~ 12755099 (-)
LOC110505352 LOC106588272 other downstream 2883440 11456367 ~ 11473970 (-)
LOC118944219 vps4a other downstream 2930985 11397068 ~ 11481374 (-)
G1954080 LOC106610776 other upstream 50851 14395307 ~ 14395691 (-)
G1954972 NA other upstream 1020846 15365302 ~ 15387650 (-)
G1955863 NA other upstream 1593403 15937859 ~ 15940045 (-)
G1955882 ralgapa2 other upstream 1610744 15955200 ~ 15955685 (-)
G1955897 NA other upstream 1627353 15971809 ~ 15972164 (-)

Expression


Co-expression Network