G1960205


Basic Information

Item Value
gene id G1960205
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 19834886 ~ 19910497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2241345
TGGGACTCATCTCTGGCAGCAGTTAGTCGGCTCACTGGGGGGGTTATCCTCCTCCACTTGAAGGTTAAAGTCTTTGTTTTCAAGCATGATGATACGAACCTGGGTCATCAGAGAGTTCAGTTTTTACTTCAGTAGAGCACAGGAAGTGAGTATGAGTGTGCAGCTCTGGTACTATTGCTGATGAATAAACACTGTCAGTGCTGCAGGGGTGGTGAGGAGGATGGATGACTCAaagtacttacagtgccttcagaaagtattcagaccccttgactatttaCAAAATTGTTActttgcagccttattctaaaattgattaaaatgtttgttttcttctcatcaatctacacacaccctATAGTgacaaaagcaaaaacaggatttaagaaatgtttgctaatttataaaaaataaaagaaacaaaataacatttacataagtattcagaccctttaatgagcactgtgttgaagcacctttggcagcaattacagcattgagtcttcttgggtatgatgctaccagcttggcacacctgtatttggggagtttctcccatttttctctgcagatcctcttaagttctgtcaggttggatggggagcattgcttttttcaggtctctccagagacattagatcgggttcaagtccaggctctggctgggccactcaaggacattcaaagacttgtcccaaagccactcctgcgttgtcttgactgtgtgcttagggttgttgtcctgttggaaggtgaaccttcgcccccaaagtgaggtcctgagctctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttgactccatcctgactagtctcccagtccctggcactgaaaaacatgcacacagcatgatgctgccaccaccgtgcttcattGTAGGGgatgtgccaggtttcctccagatgtgacgcttggcattcagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2241345 True 969 lncRNA 0.45 2 19834886 19910497

Neighbor

gene id symbol gene type direction distance location
LOC110505531 LOC106611061 coding downstream 41886 19647103 ~ 19793000 (-)
pomt2 pomt2 coding downstream 192879 19633477 ~ 19642007 (-)
LOC100136175 LOC106611063 coding downstream 202091 19612109 ~ 19632795 (-)
LOC110505529 LOC106611064 coding downstream 227455 19600234 ~ 19607431 (-)
exd1 LOC106611069 coding downstream 361891 19459418 ~ 19472995 (-)
LOC110505539 dlst coding upstream 7097 19917594 ~ 19926699 (-)
LOC110505541 LOC106611051 coding upstream 72726 19983223 ~ 20048442 (-)
LOC110505542 gpatch2l coding upstream 191261 20101758 ~ 20141822 (-)
LOC110505544 ift43 coding upstream 254671 20165168 ~ 20198478 (-)
LOC110505546 LOC106611046 coding upstream 415700 20326197 ~ 20357077 (-)
G1960181 NA non-coding downstream 26970 19799744 ~ 19807916 (-)
G1960177 NA non-coding downstream 38798 19795766 ~ 19796088 (-)
G1960162 NA non-coding downstream 56245 19778441 ~ 19778641 (-)
G1960145 NA non-coding downstream 84040 19750593 ~ 19750846 (-)
G1960139 NA non-coding downstream 90327 19744269 ~ 19744559 (-)
G1960242 NA non-coding upstream 17051 19927548 ~ 19927801 (-)
G1960270 NA non-coding upstream 66968 19977465 ~ 19977672 (-)
G1960604 tgfb3 non-coding upstream 299707 20210204 ~ 20219857 (-)
G1960671 NA non-coding upstream 398060 20308557 ~ 20308871 (-)
G1960681 NA non-coding upstream 402574 20313071 ~ 20313278 (-)
G1959757 NA other downstream 290003 19544430 ~ 19544883 (-)
LOC110505524 LOC106611070 other downstream 417037 19412027 ~ 19421296 (-)
G1959632 NA other downstream 439322 19385737 ~ 19395564 (-)
LOC110505513 LOC106578354 other downstream 751123 19078852 ~ 19092504 (-)
G1961046 NA other upstream 438295 20348792 ~ 20413709 (-)
acyp1 acyp1 other upstream 495905 20406401 ~ 20407806 (-)
G1961081 NA other upstream 503307 20413804 ~ 20414118 (-)
LOC110505560 LOC106611035 other upstream 595728 20506225 ~ 20510972 (-)

Expression


Co-expression Network