Gene
RNA
| Item | Value |
|---|---|
| gene id | G1960604 |
| gene name | tgfb3 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 20210204 ~ 20219857 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tgfb3 | Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within hematopoietic stem cell differentiation; regulation of cartilage development; and regulation of ossification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 5; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 1. Orthologous to human TGFB3 (transforming growth factor beta 3). |
| description |
|---|
| transforming growth factor beta-3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2241770 | True | 1069 | lncRNA | 0.45 | 2 | 20210204 | 20219857 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505544 | ift43 | coding | downstream | 11726 | 20165168 ~ 20198478 (-) |
| LOC110505542 | gpatch2l | coding | downstream | 68382 | 20101758 ~ 20141822 (-) |
| LOC110505541 | LOC106611051 | coding | downstream | 161762 | 19983223 ~ 20048442 (-) |
| LOC110505539 | dlst | coding | downstream | 283505 | 19917594 ~ 19926699 (-) |
| angel1 | LOC106611057 | coding | downstream | 317483 | 19883468 ~ 19892721 (-) |
| LOC110505546 | LOC106611046 | coding | upstream | 106340 | 20326197 ~ 20357077 (-) |
| jdp2a | LOC106611045 | coding | upstream | 146123 | 20365980 ~ 20383084 (-) |
| fosaa | LOC106611096 | coding | upstream | 163643 | 20383500 ~ 20387373 (-) |
| mlh3 | mlh3 | coding | upstream | 180155 | 20400012 ~ 20406260 (-) |
| acyp1 | acyp1 | coding | upstream | 186544 | 20406401 ~ 20407806 (-) |
| G1960270 | NA | non-coding | downstream | 232532 | 19977465 ~ 19977672 (-) |
| G1960242 | NA | non-coding | downstream | 282403 | 19927548 ~ 19927801 (-) |
| G1960205 | NA | non-coding | downstream | 299707 | 19834886 ~ 19910497 (-) |
| G1960181 | NA | non-coding | downstream | 402288 | 19799744 ~ 19807916 (-) |
| G1960177 | NA | non-coding | downstream | 414116 | 19795766 ~ 19796088 (-) |
| G1960671 | NA | non-coding | upstream | 88700 | 20308557 ~ 20308871 (-) |
| G1960681 | NA | non-coding | upstream | 93214 | 20313071 ~ 20313278 (-) |
| G1960685 | NA | non-coding | upstream | 96709 | 20316566 ~ 20316805 (-) |
| G1960694 | NA | non-coding | upstream | 103927 | 20323784 ~ 20324052 (-) |
| G1959757 | NA | other | downstream | 665321 | 19544430 ~ 19544883 (-) |
| exd1 | LOC106611069 | other | downstream | 747143 | 19459418 ~ 19472995 (-) |
| LOC110505524 | LOC106611070 | other | downstream | 792355 | 19412027 ~ 19421296 (-) |
| G1959632 | NA | other | downstream | 814640 | 19385737 ~ 19395564 (-) |
| LOC110505513 | LOC106578354 | other | downstream | 1126441 | 19078852 ~ 19092504 (-) |
| G1961046 | NA | other | upstream | 128935 | 20348792 ~ 20413709 (-) |
| G1961081 | NA | other | upstream | 193947 | 20413804 ~ 20414118 (-) |
| LOC110505560 | LOC106611035 | other | upstream | 286368 | 20506225 ~ 20510972 (-) |
