G1961009


Basic Information

Item Value
gene id G1961009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 20896045 ~ 20896256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2242258
GTTTTAGAGGCACCGTCTCTCATACTATCTAGTTGAGAGATCAATAATGCTTAGTGATTAAGCTGCGTTTTATTTTCGGGAGGGGAAATGGACGCAGTGTACTCTGTAAATGTTCTTATTGGCACATGTGAATTTCTTTGCACTCAAATTAAGCAGGATTAAGGCTTgagggggacagagggggagCAGGGCCTCTCCAGGCCCCAGCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2242258 True 212 lncRNA 0.46 1 20896045 20896256

Neighbor

gene id symbol gene type direction distance location
exoc5 exoc5 coding upstream 23567 20855638 ~ 20872478 (+)
LOC118944365 LOC106611023 coding upstream 50265 20839956 ~ 20845780 (+)
slc35f4 slc35f4 coding upstream 56384 20814027 ~ 20839661 (+)
zdhhc22 zdhhc22 coding upstream 192188 20700975 ~ 20703857 (+)
ngb ngb2 coding upstream 264051 20626894 ~ 20631994 (+)
otx2b LOC107085600 coding downstream 73760 20970016 ~ 20976099 (+)
LOC118944389 NA coding downstream 171386 21067642 ~ 21067775 (+)
LOC110504348 lpp60 coding downstream 292039 21188295 ~ 21208795 (+)
LOC118944379 NA coding downstream 318022 21214278 ~ 21214330 (+)
LOC110505584 NA coding downstream 326110 21222366 ~ 21223516 (+)
G1961004 NA non-coding upstream 9761 20885977 ~ 20886284 (+)
G1960963 NA non-coding upstream 15739 20879964 ~ 20880306 (+)
G1960959 NA non-coding upstream 16285 20878714 ~ 20879760 (+)
G1960992 NA non-coding upstream 53389 20842421 ~ 20842656 (+)
G1961016 NA non-coding downstream 11309 20907565 ~ 20907853 (+)
G1961020 NA non-coding downstream 18175 20914431 ~ 20914684 (+)
G1961026 NA non-coding downstream 29468 20925724 ~ 20925964 (+)
G1961428 NA non-coding downstream 80066 20976322 ~ 20976930 (+)
G1961430 NA non-coding downstream 87365 20983621 ~ 20984201 (+)
G1960977 NA other upstream 73407 20822317 ~ 20822638 (+)
G1960851 NA other upstream 260433 20634139 ~ 20635612 (+)
G1960756 NA other upstream 476739 20418994 ~ 20419306 (+)
LOC110505516 LOC106611074 other upstream 1745845 19132397 ~ 19150399 (+)
G1959241 LOC106613263 other upstream 1747689 19147948 ~ 19148356 (+)
G1961468 NA other downstream 142949 21039205 ~ 21039800 (+)
G1961492 NA other downstream 171708 21067964 ~ 21068669 (+)
G1962316 NA other downstream 895927 21792183 ~ 21844010 (+)
LOC110505603 LOC106610998 other downstream 942250 21838453 ~ 21886964 (+)
G1962880 rtn1 other downstream 1372699 22250058 ~ 22274663 (+)

Expression


Co-expression Network