G1961016


Basic Information

Item Value
gene id G1961016
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 20907565 ~ 20907853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2242265
catttaggtcaacattggatcattcagagatcctcactgaacttctggagagattttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcattccacttcatgattgtgtcccacctgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2242265 True 289 lncRNA 0.37 1 20907565 20907853

Neighbor

gene id symbol gene type direction distance location
exoc5 exoc5 coding upstream 35087 20855638 ~ 20872478 (+)
LOC118944365 LOC106611023 coding upstream 61785 20839956 ~ 20845780 (+)
slc35f4 slc35f4 coding upstream 67904 20814027 ~ 20839661 (+)
zdhhc22 zdhhc22 coding upstream 203708 20700975 ~ 20703857 (+)
ngb ngb2 coding upstream 275571 20626894 ~ 20631994 (+)
otx2b LOC107085600 coding downstream 62163 20970016 ~ 20976099 (+)
LOC118944389 NA coding downstream 159789 21067642 ~ 21067775 (+)
LOC110504348 lpp60 coding downstream 280442 21188295 ~ 21208795 (+)
LOC118944379 NA coding downstream 306425 21214278 ~ 21214330 (+)
LOC110505584 NA coding downstream 314513 21222366 ~ 21223516 (+)
G1961009 NA non-coding upstream 11309 20896045 ~ 20896256 (+)
G1961004 NA non-coding upstream 21281 20885977 ~ 20886284 (+)
G1960963 NA non-coding upstream 27259 20879964 ~ 20880306 (+)
G1960959 NA non-coding upstream 27805 20878714 ~ 20879760 (+)
G1961020 NA non-coding downstream 6578 20914431 ~ 20914684 (+)
G1961026 NA non-coding downstream 17871 20925724 ~ 20925964 (+)
G1961428 NA non-coding downstream 68469 20976322 ~ 20976930 (+)
G1961430 NA non-coding downstream 75768 20983621 ~ 20984201 (+)
G1961432 NA non-coding downstream 76923 20984776 ~ 20985459 (+)
G1960977 NA other upstream 84927 20822317 ~ 20822638 (+)
G1960851 NA other upstream 271953 20634139 ~ 20635612 (+)
G1960756 NA other upstream 488259 20418994 ~ 20419306 (+)
LOC110505516 LOC106611074 other upstream 1757365 19132397 ~ 19150399 (+)
G1959241 LOC106613263 other upstream 1759209 19147948 ~ 19148356 (+)
G1961468 NA other downstream 131352 21039205 ~ 21039800 (+)
G1961492 NA other downstream 160111 21067964 ~ 21068669 (+)
G1962316 NA other downstream 884330 21792183 ~ 21844010 (+)
LOC110505603 LOC106610998 other downstream 930653 21838453 ~ 21886964 (+)
G1962880 rtn1 other downstream 1361102 22250058 ~ 22274663 (+)

Expression


Co-expression Network