G1961026


Basic Information

Item Value
gene id G1961026
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 20925724 ~ 20925964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2242275
cttcaaccatatctacatgtacatactacctcaatcagccagactaaccggtgtctgtacgTAGCCTCaatacttttatagcctcgctactgtatacagccagtctttttactgttttatttctttacttacctattgttcacctaacaccttttttgcactattggttagagcctgtaagtaagcatttcactgtaactgttgtattcggcacacgtgactgTTACGCACACTTctgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2242275 True 241 lncRNA 0.40 1 20925724 20925964

Neighbor

gene id symbol gene type direction distance location
exoc5 exoc5 coding upstream 53246 20855638 ~ 20872478 (+)
LOC118944365 LOC106611023 coding upstream 79944 20839956 ~ 20845780 (+)
slc35f4 slc35f4 coding upstream 86063 20814027 ~ 20839661 (+)
zdhhc22 zdhhc22 coding upstream 221867 20700975 ~ 20703857 (+)
ngb ngb2 coding upstream 293730 20626894 ~ 20631994 (+)
otx2b LOC107085600 coding downstream 44052 20970016 ~ 20976099 (+)
LOC118944389 NA coding downstream 141678 21067642 ~ 21067775 (+)
LOC110504348 lpp60 coding downstream 262331 21188295 ~ 21208795 (+)
LOC118944379 NA coding downstream 288314 21214278 ~ 21214330 (+)
LOC110505584 NA coding downstream 296402 21222366 ~ 21223516 (+)
G1961020 NA non-coding upstream 11040 20914431 ~ 20914684 (+)
G1961016 NA non-coding upstream 17871 20907565 ~ 20907853 (+)
G1961009 NA non-coding upstream 29468 20896045 ~ 20896256 (+)
G1961004 NA non-coding upstream 39440 20885977 ~ 20886284 (+)
G1960963 NA non-coding upstream 45418 20879964 ~ 20880306 (+)
G1961428 NA non-coding downstream 50358 20976322 ~ 20976930 (+)
G1961430 NA non-coding downstream 57657 20983621 ~ 20984201 (+)
G1961432 NA non-coding downstream 58812 20984776 ~ 20985459 (+)
G1961433 NA non-coding downstream 59563 20985527 ~ 20985945 (+)
G1961434 NA non-coding downstream 60283 20986247 ~ 20986500 (+)
G1960977 NA other upstream 103086 20822317 ~ 20822638 (+)
G1960851 NA other upstream 290112 20634139 ~ 20635612 (+)
G1960756 NA other upstream 506418 20418994 ~ 20419306 (+)
LOC110505516 LOC106611074 other upstream 1775524 19132397 ~ 19150399 (+)
G1959241 LOC106613263 other upstream 1777368 19147948 ~ 19148356 (+)
G1961468 NA other downstream 113241 21039205 ~ 21039800 (+)
G1961492 NA other downstream 142000 21067964 ~ 21068669 (+)
G1962316 NA other downstream 866219 21792183 ~ 21844010 (+)
LOC110505603 LOC106610998 other downstream 912542 21838453 ~ 21886964 (+)
G1962880 rtn1 other downstream 1342991 22250058 ~ 22274663 (+)

Expression


Co-expression Network