G1962293


Basic Information

Item Value
gene id G1962293
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 21744479 ~ 21744754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2243723
atttataacccaaccctgatctgtacttctccacaactttatccctgacctgtttggagagctcattggtcttcatggtgcagcttgcttggtggtgttacagactctggggcctttcagaacaggtgtatatatactcagatcatgtgacagatcatgtgacacttagattgcacacaggtggactttatttagctaattatgtgacttctggaggtaattggttgcaccagatcttatttaggggcttcatagcaaaggaggtgaatacatatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2243723 True 276 lncRNA 0.42 1 21744479 21744754

Neighbor

gene id symbol gene type direction distance location
LOC118944344 NA coding upstream 2870 21739519 ~ 21741609 (+)
ddx24 ddx24 coding upstream 29178 21710791 ~ 21715301 (+)
si:ch1073-416d2.3 LOC106611008 coding upstream 33573 21708375 ~ 21710906 (+)
atxn3 LOC106611010 coding upstream 36728 21705323 ~ 21707751 (+)
LOC110505593 LOC106611009 coding upstream 46524 21693598 ~ 21697955 (+)
LOC110505599 NA coding downstream 39 21744793 ~ 21746597 (+)
LOC110505601 LOC106611002 coding downstream 13991 21758745 ~ 21771882 (+)
LOC110505603 LOC106610998 coding downstream 93699 21838453 ~ 21886964 (+)
itpk1b LOC106597151 coding downstream 162682 21907436 ~ 21967129 (+)
chmp3 LOC106610994 coding downstream 246057 21990811 ~ 21997582 (+)
G1962235 NA non-coding upstream 115037 21629220 ~ 21629442 (+)
G1962228 NA non-coding upstream 122788 21621464 ~ 21621691 (+)
G1962204 NA non-coding upstream 156632 21587475 ~ 21587847 (+)
G1962196 NA non-coding upstream 168695 21575554 ~ 21575784 (+)
G1962432 NA non-coding downstream 216305 21961059 ~ 21962481 (+)
G1962397 NA non-coding downstream 222758 21967512 ~ 21968273 (+)
G1962435 LOC106610996 non-coding downstream 227675 21972429 ~ 21973320 (+)
G1961492 NA other upstream 675810 21067964 ~ 21068669 (+)
G1961468 NA other upstream 704679 21039205 ~ 21039800 (+)
G1960977 NA other upstream 921841 20822317 ~ 20822638 (+)
G1960851 NA other upstream 1108867 20634139 ~ 20635612 (+)
G1960756 NA other upstream 1325173 20418994 ~ 20419306 (+)
G1962316 NA other downstream 47429 21792183 ~ 21844010 (+)
G1962880 rtn1 other downstream 524201 22250058 ~ 22274663 (+)
lrrc9 LOC106610979 other downstream 565590 22297012 ~ 22318009 (+)
G1962949 NA other downstream 647837 22392591 ~ 22392956 (+)

Expression


Co-expression Network