G1962397


Basic Information

Item Value
gene id G1962397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 21967512 ~ 21968273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2243833
tttttgtcatgagTAGTGAGATGGTGGTTTGGCAAATTAAATGATCTTCAAGACCAAGCTTACAGTTGTCACTGTCTTCACCCTTAGCATCCAGTTGAAGTGTGTGGAAAAGAGTGCAGGGCTGCCAACTCTGTAAAAAGAATAGGGTGTTTTAAGCACTGCTTCATCACAGGCTGACACAGTGAATTGACAAGCTTATCAGAGGTTACTTAGCCCCAATGACCAGGTGACTGACCATTGAGTGTAGCCATTCAACCCGCTGCCCTCCAGAACAAGAGTTGGGTAGCAGTGGTCCTAAAGCCTTCCTTATTGAAGGACACATCCTCAACCCTGTGTGGGTGAAGTGATCAAGGAGAGAATGTCTTAACCAAGCCATGCCTAGTATGTTGTGGAAACACTGCAATCTCTATACTGTGTGTTCTGCATCTAAATGGGAAATATTTCCCCTACTTACTACCTTGTTCATTTCTCCAACCCTGACCGTCATTGTGCTCTCCACTTCCACCTCAATGTTTACTTGGAAATGTTACTATATAtgtatagttgtgtgtgtgtatacatatgcATAAATTTTTGTAAAAGTTCTCTAAATAATAATTAATACAATGACTTTTTTTATTAAATGGCTAAAACAGGGTGAAAAATAACTTAAGTGATTTCTAAAAAAACCTTGCGAGATAAATTGCTATTACTGTTCTAGTGCTTTAGTCCAGAATAACAGATCATGTATATTCTTGGTAAAAGTAATTAAATTAATTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2243833 True 762 lncRNA 0.39 1 21967512 21968273

Neighbor

gene id symbol gene type direction distance location
itpk1b LOC106597151 coding upstream 383 21907436 ~ 21967129 (+)
LOC110505603 LOC106610998 coding upstream 80548 21838453 ~ 21886964 (+)
LOC110505601 LOC106611002 coding upstream 195630 21758745 ~ 21771882 (+)
LOC110505599 NA coding upstream 220915 21744793 ~ 21746597 (+)
LOC118944344 NA coding upstream 225903 21739519 ~ 21741609 (+)
chmp3 LOC106610994 coding downstream 22538 21990811 ~ 21997582 (+)
LOC110505607 LOC106610991 coding downstream 31417 21999690 ~ 22016010 (+)
zfyve28 LOC106610988 coding downstream 85102 22053375 ~ 22117130 (+)
LOC110505613 LOC106610987 coding downstream 149495 22117768 ~ 22171900 (+)
kif15 kif15 coding downstream 217926 22186199 ~ 22206709 (+)
G1962432 NA non-coding upstream 5031 21961059 ~ 21962481 (+)
G1962293 NA non-coding upstream 222758 21744479 ~ 21744754 (+)
G1962435 LOC106610996 non-coding downstream 4156 21972429 ~ 21973320 (+)
G1962438 NA non-coding downstream 7698 21975971 ~ 21976292 (+)
G1962396 NA non-coding downstream 19789 21988062 ~ 21989954 (+)
G1962443 NA non-coding downstream 29979 21998252 ~ 21998543 (+)
G1962316 NA other upstream 123502 21792183 ~ 21844010 (+)
G1961492 NA other upstream 898843 21067964 ~ 21068669 (+)
G1961468 NA other upstream 927712 21039205 ~ 21039800 (+)
G1960977 NA other upstream 1144874 20822317 ~ 20822638 (+)
G1962880 rtn1 other downstream 300682 22250058 ~ 22274663 (+)
lrrc9 LOC106610979 other downstream 342071 22297012 ~ 22318009 (+)
G1962949 NA other downstream 424318 22392591 ~ 22392956 (+)
G1963734 NA other downstream 949673 22917946 ~ 22918686 (+)
G1964177 NA other downstream 1637661 23605934 ~ 23613765 (+)

Expression


Co-expression Network