Gene
RNA
| Item | Value |
|---|---|
| gene id | G1962435 |
| gene name | LOC106610996 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 21972429 ~ 21973320 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine/threonine-protein kinase PLK4-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2243882 | False | 525 | lncRNA | 0.53 | 4 | 21972429 | 21973320 |
| TU2243883 | True | 441 | lncRNA | 0.51 | 2 | 21972429 | 21973012 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| itpk1b | LOC106597151 | coding | upstream | 5300 | 21907436 ~ 21967129 (+) |
| LOC110505603 | LOC106610998 | coding | upstream | 85465 | 21838453 ~ 21886964 (+) |
| LOC110505601 | LOC106611002 | coding | upstream | 200547 | 21758745 ~ 21771882 (+) |
| LOC110505599 | NA | coding | upstream | 225832 | 21744793 ~ 21746597 (+) |
| LOC118944344 | NA | coding | upstream | 230820 | 21739519 ~ 21741609 (+) |
| chmp3 | LOC106610994 | coding | downstream | 17491 | 21990811 ~ 21997582 (+) |
| LOC110505607 | LOC106610991 | coding | downstream | 26370 | 21999690 ~ 22016010 (+) |
| zfyve28 | LOC106610988 | coding | downstream | 80055 | 22053375 ~ 22117130 (+) |
| LOC110505613 | LOC106610987 | coding | downstream | 144448 | 22117768 ~ 22171900 (+) |
| kif15 | kif15 | coding | downstream | 212879 | 22186199 ~ 22206709 (+) |
| G1962397 | NA | non-coding | upstream | 4156 | 21967512 ~ 21968273 (+) |
| G1962432 | NA | non-coding | upstream | 9948 | 21961059 ~ 21962481 (+) |
| G1962293 | NA | non-coding | upstream | 227675 | 21744479 ~ 21744754 (+) |
| G1962438 | NA | non-coding | downstream | 2651 | 21975971 ~ 21976292 (+) |
| G1962396 | NA | non-coding | downstream | 14742 | 21988062 ~ 21989954 (+) |
| G1962443 | NA | non-coding | downstream | 24932 | 21998252 ~ 21998543 (+) |
| G1962399 | NA | non-coding | downstream | 46320 | 22019640 ~ 22021649 (+) |
| G1962316 | NA | other | upstream | 128419 | 21792183 ~ 21844010 (+) |
| G1961492 | NA | other | upstream | 903760 | 21067964 ~ 21068669 (+) |
| G1961468 | NA | other | upstream | 932629 | 21039205 ~ 21039800 (+) |
| G1960977 | NA | other | upstream | 1149791 | 20822317 ~ 20822638 (+) |
| G1962880 | rtn1 | other | downstream | 295635 | 22250058 ~ 22274663 (+) |
| lrrc9 | LOC106610979 | other | downstream | 337024 | 22297012 ~ 22318009 (+) |
| G1962949 | NA | other | downstream | 419271 | 22392591 ~ 22392956 (+) |
| G1963734 | NA | other | downstream | 944626 | 22917946 ~ 22918686 (+) |
| G1964177 | NA | other | downstream | 1632614 | 23605934 ~ 23613765 (+) |
