G1962838 (LOC106610986)


Basic Information

Item Value
gene id G1962838
gene name LOC106610986
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22176207 ~ 22178737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2244336
ATAAAAGGAACCAACATGAATCAGTATAATTGAAATCTAGTGAAATACTATTATGGCACTTGATCTCCAATCAAGAGCAACAAAACATATTTACAAAGCACTATTCACACACACTTGTTCATCAGGACCACCACATACTCAGATTTGTAAAAAATCTTGACAACCTAACAACGTCAGACAGACATAAGGTTGAACTCAGCCCTTCTGGACTTTAGCTATTAGTTCATCGCAAAGGTTGGTGAGTTCTTCAGTCTCTTTTACTTTCTGGTCAAGGCTCTTCTCCAGTGACTGGGCCTTTAGCTGCTCCCTGCGCAGCTGGGCCTGAAGTGCAGCGACCTCAGACTTTAATTTGGAGCGCACCTCCGCAATCTCTCCATTTGCCAGGCTAATTTTCTGCTCTGCATGGGCTTTCAGGGTCTGGTAGCGCTGCTCCTCCTCCTTGATCCTAGCCAGGTAATCTTGAGCACATTTCTTCAGCATCTCTTCATTCTTTATGTAACCCTCGATGACCTCTTTGTATTTGTCTAGTCTCTTGAAGAGATCTGAGAAGGACCGCTCCATTGCATTCAGGTCCTCTGAtaactgttccttctcctgcaGGACTTTAGTGATGTCAGCCTGGGctttctccgtctccctctgttTATCAGCCAATATCTGAGCGATTGTGGCTTCAAACGCTGACATGATTTTCCCCATTTCATGATTATCCTGAGATAGCGTGTCATGCTTCGATTTCCATTCATCCGCATTCTCCTTTGCTTGTTTCTGGATCTTGGCAATGGCAACATTCATATCTTGCTGACTGTATTTCAGAACCTCTATGATGTTATCATCAGGGTTGGCTGGTTGGGGGAAAGTAGGGACCAGATTCTCAAGAACAGGGGAATTCGTCACAAGAGTCCGAGGACCAACAACTTGAACAGGTGGTAGGTCATGAAGCAGTTTAGGGTTGACAGATTTCAGTCCATTCACCTCCTTGGTTCCAGTCTTCTGGGTCTCCACACGTGAAGCAAGGGGAGCAGGTCGTGGGAGGTTGTCGAGTCCTGCAGGGACGCCAGACTTCTTGGGGCTCTCCCGCATTAGTGGGTCAAATTTGAGGTACAGTGATTGTTTTCTCAGTGCCGACTCCTTAAACTGAATATAAAATGCAAAGTAATTGAGGAAGCCCAAAGCCTAAAATGCAAAACAAACCATGTAATAGTCGATTTATAAAAG

Function

NR:

description
transforming acidic coiled-coil-containing protein 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2244336 True 1218 lncRNA 0.45 9 22176207 22178737

Neighbor

gene id symbol gene type direction distance location
LOC110505613 LOC106610987 coding upstream 4307 22117768 ~ 22171900 (+)
zfyve28 LOC106610988 coding upstream 59077 22053375 ~ 22117130 (+)
LOC110505607 LOC106610991 coding upstream 160197 21999690 ~ 22016010 (+)
chmp3 LOC106610994 coding upstream 178625 21990811 ~ 21997582 (+)
itpk1b LOC106597151 coding upstream 209078 21907436 ~ 21967129 (+)
kif15 kif15 coding downstream 7462 22186199 ~ 22206709 (+)
LOC110504207 LOC106610980 coding downstream 44377 22223114 ~ 22249992 (+)
lrrc9 LOC106610979 coding downstream 118275 22297012 ~ 22318009 (+)
LOC110504208 LOC106598670 coding downstream 177237 22355974 ~ 22365214 (+)
ppm1aa LOC106610975 coding downstream 194220 22372957 ~ 22386710 (+)
G1962816 NA non-coding upstream 48471 22127536 ~ 22127736 (+)
G1962815 NA non-coding upstream 50119 22125720 ~ 22126088 (+)
G1962513 NA non-coding upstream 62648 22113322 ~ 22113559 (+)
G1962469 NA non-coding upstream 62891 22113033 ~ 22113316 (+)
G1962840 NA non-coding downstream 659 22179396 ~ 22181425 (+)
G1962858 LOC106610983 non-coding downstream 42199 22220936 ~ 22221471 (+)
G1962859 NA non-coding downstream 43257 22221994 ~ 22222290 (+)
G1962880 rtn1 non-coding downstream 71321 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 308174 21838453 ~ 21886964 (+)
G1962316 NA other upstream 332197 21792183 ~ 21844010 (+)
G1961492 NA other upstream 1107538 21067964 ~ 21068669 (+)
G1961468 NA other upstream 1136407 21039205 ~ 21039800 (+)
G1960977 NA other upstream 1353569 20822317 ~ 20822638 (+)
G1962949 NA other downstream 213854 22392591 ~ 22392956 (+)
G1963734 NA other downstream 739209 22917946 ~ 22918686 (+)
G1964177 NA other downstream 1427197 23605934 ~ 23613765 (+)

Expression


Co-expression Network