G1962840


Basic Information

Item Value
gene id G1962840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22179396 ~ 22181425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2244339
TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA
>TU2244343
TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCGGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCAGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGACTCTTCAACTTCCACCTTTTCAGAGTCATCGCATGGCTGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA
>TU2244344
TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCGGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCAGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGACTCTTCAACTTCCACCTTTTCAGAGTCATCGCATGGCTGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA
>TU2244346
TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA
>TU2244347
TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCGGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCAGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGACTCTTCAACTTCCACCTTTTCAGAGTCATCGCATGGCTGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA

Function

NR:

description
transforming acidic coiled-coil-containing protein 3-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2244339 False 1418 lncRNA 0.47 3 22179396 22181425
TU2244343 False 1724 lncRNA 0.48 2 22179396 22181425
TU2244344 False 1724 lncRNA 0.48 2 22179396 22181425
TU2244346 False 1418 lncRNA 0.47 2 22179396 22181425
TU2244347 True 1724 lncRNA 0.48 2 22179396 22181425

Neighbor

gene id symbol gene type direction distance location
LOC110505613 LOC106610987 coding upstream 7496 22117768 ~ 22171900 (+)
zfyve28 LOC106610988 coding upstream 62266 22053375 ~ 22117130 (+)
LOC110505607 LOC106610991 coding upstream 163386 21999690 ~ 22016010 (+)
chmp3 LOC106610994 coding upstream 181814 21990811 ~ 21997582 (+)
itpk1b LOC106597151 coding upstream 212267 21907436 ~ 21967129 (+)
kif15 kif15 coding downstream 4774 22186199 ~ 22206709 (+)
LOC110504207 LOC106610980 coding downstream 41689 22223114 ~ 22249992 (+)
lrrc9 LOC106610979 coding downstream 115587 22297012 ~ 22318009 (+)
LOC110504208 LOC106598670 coding downstream 174549 22355974 ~ 22365214 (+)
ppm1aa LOC106610975 coding downstream 191532 22372957 ~ 22386710 (+)
G1962838 LOC106610986 non-coding upstream 659 22176207 ~ 22178737 (+)
G1962816 NA non-coding upstream 51660 22127536 ~ 22127736 (+)
G1962815 NA non-coding upstream 53308 22125720 ~ 22126088 (+)
G1962513 NA non-coding upstream 65837 22113322 ~ 22113559 (+)
G1962858 LOC106610983 non-coding downstream 39511 22220936 ~ 22221471 (+)
G1962859 NA non-coding downstream 40569 22221994 ~ 22222290 (+)
G1962880 rtn1 non-coding downstream 68633 22250058 ~ 22274663 (+)
G1962919 NA non-coding downstream 139016 22320441 ~ 22320899 (+)
LOC110505603 LOC106610998 other upstream 311363 21838453 ~ 21886964 (+)
G1962316 NA other upstream 335386 21792183 ~ 21844010 (+)
G1961492 NA other upstream 1110727 21067964 ~ 21068669 (+)
G1961468 NA other upstream 1139596 21039205 ~ 21039800 (+)
G1960977 NA other upstream 1356758 20822317 ~ 20822638 (+)
G1962949 NA other downstream 211166 22392591 ~ 22392956 (+)
G1963734 NA other downstream 736521 22917946 ~ 22918686 (+)
G1964177 NA other downstream 1424509 23605934 ~ 23613765 (+)

Expression


Co-expression Network